1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatatatataactatttcatttttcaattgacattttgactcctatttatatgcttcgtttggtttctctgctcatggttactgattttttttgttgaaaacaaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTTAAGCTCATCAATGCCAAGAACACCATGGAAATTGGTGTCTACACTGGA
species | Glycine max |
transcript | GLYMA02G11530.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|15201563|gb|BI424930.1|BI424930
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|19935964|gb|BQ080661.1|BQ080661
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|26047747|gb|CA784441.1|CA784441
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|17402133|gb|BM178915.1|BM178915
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|17401035|gb|BM177817.1|BM177817
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|23733582|gb|BU764995.1|BU764995
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|16346918|gb|BI972513.1|BI972513
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
cgtttggtttctctgctcatggttactgattttttttgttgaaaacaaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTTAAGCTCATCAATGCCAAGAACACCATGGAAATTGGTGTCTACACTGGA
tactgat putative branch site (score: 2)
attttttttgttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatatataactatttcatttttcaattgacattttgactcctatttatatgcttcgtttggtttctctgctcatggttactgattttttttgttgaaaacaaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTTAAGCTCATCAATGCCAAGAACACCATGGAAATTGGTGTCTACACTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA