1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatatatataactatttcatttttcaattgacattttgactcctatttatatgcttcgtttggtttctctgctcatggttactgattttttttgttgaaaacaaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTTAAGCTCATCAATGCCAAGAACACCATGGAAATTGGTGTCTACACTGGA
species | Glycine max |
transcript | GLYMA02G11530.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|19936522|gb|BQ080903.1|BQ080903
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|308098994|gb|HO760835.1|HO760835
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|19935964|gb|BQ080661.1|BQ080661
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|192325510|gb|FK018421.1|FK018421
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|26047747|gb|CA784441.1|CA784441
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|7591492|gb|AW707224.1|AW707224
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|192333796|gb|FK025841.1|FK025841
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|17401035|gb|BM177817.1|BM177817
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|15201563|gb|BI424930.1|BI424930
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|19936001|gb|BQ080677.1|BQ080677
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|192294152|gb|FG986241.1|FG986241
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|7588790|gb|AW704578.1|AW704578
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|5677754|gb|AI938893.1|AI938893
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|21601527|gb|BQ611858.1|BQ611858
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAATATCTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|151393914|gb|EV263785.1|EV263785
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|14991940|gb|BI317613.1|BI317613
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: AAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|192325368|gb|FK018354.1|FK018354
genomic: AAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|23733582|gb|BU764995.1|BU764995
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|17402133|gb|BM178915.1|BM178915
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|16346918|gb|BI972513.1|BI972513
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTEST: gi|192304327|gb|FG996453.1|FG996453
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
EST: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATG GAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
genomic: GAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGgtatatatat ... caaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCT
cgtttggtttctctgctcatggttactgattttttttgttgaaaacaaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTTAAGCTCATCAATGCCAAGAACACCATGGAAATTGGTGTCTACACTGGA
tactgat putative branch site (score: 2)
attttttttgttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatatataactatttcatttttcaattgacattttgactcctatttatatgcttcgtttggtttctctgctcatggttactgattttttttgttgaaaacaaacaacagGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTTAAGCTCATCAATGCCAAGAACACCATGGAAATTGGTGTCTACACTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA