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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcttgtttagatgttactgtgtgtaaatgttttatgatttatgtccatattatacaagaatcagatcagctgagacatctgtcttaattttttctgcagGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAG

Basic information

species Glycine max
transcript GLYMA02G11300.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G11300.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0011g02820.t01 (Vitis vinifera), 3'ss of exon 2
atcttgtttagatgttactgtgtgtaaatgttttatgat-ttatgtccatattatacaagaatcagatcagctgagacatctgtcttaattttttctgcagGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAG
     || ||  |||   | | |   | |  |||||| | | |  |  || | ||     || ||    || |        | | || ||  | | |||||||||| |||||||| ||||| || ||||| ||| |||| ||||   | ||||||||||| ||||||||||||
-aagagtgtatttgtatttcttttctatttatttatgttatcacattaatgtaatttgttaaacactgaagatttctttctttttttgatcatctttgcagGATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatattatacaagaatcagatcagctgagacatctgtcttaattttttctgcagGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAG
                                     tcttaat  putative branch site (score: 3)
                                     tcttaattttttct  CT-rich tract
                                   tgtcttaatttttt  TA-rich tract