Sequence
atgc intronic sequence ATGC exonic sequence...aaatatcagggtcacctttctatgaaccacagaacatgtatatatccgtacgtttgaatgaatatatcgtgtaccatatttataatgaatatgtgtgcagTGTGGAACGAGCTAGAGAAAGAAAACAAGGAGTTTTTTGAGGAGTATGCCAAAGCCAAGAGTAAGGACGAACGAATGTCGGAGGAAGAGACAAGCCAAAT
Basic information
species | Glycine max |
transcript | GLYMA02G10620.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G10620.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G108723_T01 (Zea mays), 3'ss of exon 2
-------------------------------------------------------------------------------------aaatatcagggtcacctttctatgaaccacagaacatgtatatatccgtacgtttgaatgaatatatcgtgta--ccatatttataatgaatatgtgtgcagTGTGGAACGAGCTAGAGAAAGAAAACAAGGAGTTTTTTGAGGAGTATGCCAAAG-CCAAGAGTAAGGACGAACGAATGTCG-GAGGAAGAGACAAGCCAAAT
|| | ||| || | | | | || ||||| || | | | || || ||| | | | | ||| |||||||||||| |||||||||||||| ||||||||||| || ||| ||| ||| | || ||| | | | | | | || || | | | |
gtaccggccgtactaccgtgcatatatactggacacgcgcacgcgttatgctttccttcccccgttcaaccatttctcgtttaccttccatgcataatatgcttcaataatcgatcatagat-tatattgttgttgttctattctatcatttcatgtggtctgaaaaagcacaccacatgcatgcagTGTGGAAGGAGCTAGAGAAAGAGAACAAGGAGTTCTTCGAGACGTACAACAAGGACCGCGAGGAGCGGAAGGTGGAGGCGGAGACGATGGCGCGGATCGA--
upper sequence: GLYMA02G10620.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0317g00020.t01 (Vitis vinifera), 3'ss of exon 2
aaatatcagggtcacctt-tctatgaaccacagaacatgtatatatccgtacgtttgaatgaat--atatcgt-gtaccatatttataatgaa---tatgtgtgcagTGTGGAACGAGCTAGAGAAAGAAAACAAGGAGTTTTTTGAGG---AGTATGCCAAAGCCAAGAGTAAGGACGAACGAATGTCGGAGGAAGAGACAAGCCAAAT
|| | | | | | | ||| | | |||| | | || | |||| || | | || || ||| || ||| || || |||||||||||||||||| || | |||||||| |||||||| || ||||||| | || | || || | | | || || ||||||| |||| ||||||| | |
-gttagctcctttagatcatgcacgaatctctctctatgtgtttg-cctttcgttcacataactccgtacggtcgtaatatttttgtataaaaatttatgtgtgcagTGTGGAATGAATTGGAGAAAGAGAACAAGGAATTCTTTGAGGCCTACCATACTCAAACCCAAACCAGAGATGACAGAATGTCAGAGGCTGAGACAAACGA--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccgtacgtttgaatgaatatatcgtgtaccatatttataatgaatatgtgtgcagTGTGGAACGAGCTAGAGAAAGAAAACAAGGAGTTTTTTGAGGAGTATGCCAAAGCCAAGAGTAAGGACGAACGAATGTCGGAGGAAGAGACAAGCCAAAT
taccatatttataatg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaatatcagggtcacctttctatgaaccacagaacatgtatatatccgtacgtttgaatgaatatatcgtgtaccatatttataatgaatatgtgtgcagTGTGGAACGAGCTAGAGAAAGAAAACAAGGAGTTTTTTGAGGAGTATGCCAAAGCCAAGAGTAAGGACGAACGAATGTCGGAGGAAGAGACAAGCCAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - -tcacctt
- - - - - - - - - - - - aaccaca
- - - - - - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgtac