1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaggcaaaaccattttcaaatttattattgttatttggattaaaggttgaaacttgaatctggtgtgtggtttttagACACGCGGAGGAAGCGAAAGCGGGGTGGGGGCTTGGTGGTATCGAAGAAGAAGAGGAAGCTGTTGGCGTTCGTGCCGAGTGAGGATCCCAATAGAAGATT
species | Glycine max |
transcript | GLYMA02G10600.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATCGACTTCTTTCGAATCCAACGCTCCCCTGAGGCATTATCAAATCAAG ACACGCGGAGGAAGCGAAAGCGGGGTGGGGGCTTGGTGGTATCGAAGAAGAEST: gi|13252302|gb|BG363205.1|BG363205
genomic: CATCGACTTCTTTCGAATCCAACGCTCCCCTGAGGCATTATCAAATCAAGgtaaggcaaa ... tggtttttagACACGCGGAGGAAGCGAAAGCGGGGTGGGGGCTTGGTGGTATCGAAGAAGA
EST: CATCGACTTCTTTCGAATCCAACGCTCCCCTGAGGCATTATCAAATCAAG ACACGCGGAGGAAGCGAAAGCGGGGTGGGGGCTTGGTGGTATCGAAGAAGA
genomic: CATCGACTTCTTTCGAATCCAACGCTCCCCTGAGGCATTATCAAATCAAGgtaaggcaaa ... tggtttttagACACGCGGAGGAAGCGAAAGCGGGGTGGGGGCTTGGTGGTATCGAAGAAGA
tattattgttatttggattaaaggttgaaacttgaatctggtgtgtggtttttagACACGCGGAGGAAGCGAAAGCGGGGTGGGGGCTTGGTGGTATCGAAGAAGAAGAGGAAGCTGTTGGCGTTCGTGCCGAGTGAGGATCCCAATAGAAGATT
ttttt CT-rich tract
ttatttggattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggcaaaaccattttcaaatttattattgttatttggattaaaggttgaaacttgaatctggtgtgtggtttttagACACGCGGAGGAAGCGAAAGCGGGGTGGGGGCTTGGTGGTATCGAAGAAGAAGAGGAAGCTGTTGGCGTTCGTGCCGAGTGAGGATCCCAATAGAAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT