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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttctacattttcttgttatttatatgcgtcatcaatgttttacgtcatgaaattatgtataatgcctgcttattgatgttatttctctttgcaaggaagACTCTGGTTTTGTGCCCCTATTTGTATATGCCATATTTGGGTCTTCTCGCCAGCTTGCAGTAGGTCCGGTGGCATTGGTTTCTCTCTTGGTCTCTAATGT

Basic information

species Glycine max
transcript GLYMA02G10590.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10590.2 (Glycine max), 3'ss of exon 2
lower sequence: AT5G13550.1 (Arabidopsis thaliana), 3'ss of exon 2
-------tttctacattttcttgttatttatat-gcgtcatcaatgttttacgtc--atgaaattatgtataatgcctgctta---ttgatgttatttctctttgcaaggaagACTCTGGTTTTGTGCCCCTATTTGTATATGCCATATTTGGGTCTTCTCGCCAGCTTGCAGTAGGTCCGGTGGCATTGGTTTCTCTCTTGGTCTCTAATGT
       ||  |     ||| |   | |  ||| |    |    || | |  ||   | |||||     || |||   ||||    |  || ||||  |||||||  | | |||||||   ||||||||  ||||||| |||||||||||||| || || || ||||||||| | || || || ||||||||||||||  | |||||||||| 
gtgagttttattgtgaattcataggaatgctattgaagtactcctgctcttggtttaaagaaatgcctaatcatgttagctttgattcaattttataactctttg--atgcagACTCTTCATTTGTGCCGGTATTTGTCTATGCCATATTTGGCTCATCCCGTCAGCTTGCAATTGGACCTGTAGCATTGGTTTCTCTTCTCGTCTCTAATGC

upper sequence: GLYMA02G10590.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 3'ss of exon 2
tttctacattttcttgttatttatatgcgtcatcaatgttttacgtcatgaaattatgtataatgcctgcttattga---tgttatttctctttgcaagga-agACTCTGGTTTTGTGCCCCTATTTGTATATGCCATATTTGGGTCTTCTCGCCAGCTTGCAGTAGGTCCGGTGGCATTGGTTTCTCTCTTGGTCTCTAATGT
 | ||  | || || ||| ||| |   | | ||  ||   |    |  |||| | || | |    | |    | ||    | |||||| || ||   | || ||||||  ||||||||||  ||||||| ||||| ||||||||||| ||||||||||||||| | ||||| || ||||||||||| ||  |||||||||||||
-tacttgagttactagttttttctt--ctttatttatacctctttttctgaa-tcatttctgcctcttttacactggaattcttatttgtccttcttaagacagACTCCAGTTTTGTGCCTATATTTGTGTATGCAATATTTGGGTCATCTCGCCAGCTTGCAATCGGTCCTGTAGCATTGGTTTCACTACTGGTCTCTAATGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320748|gb|GR827197.1|GR827197
EST:     TCGATGTCCTATGCAAAATTGGCTGGACTTCAACCGATATATGGACTCT                         ACTCTGGTTTTGTGCCCCTATTTGTATATGCCATATTTGGGTCTTCTCGCC
genomic: TCGATGTCCTATGCAAAATTGGCTGGACTTCAACCGATATATGGACTCTgtaagattgc ... tgcaaggaagACTCTGGTTTTGTGCCCCTATTTGTATATGCCATATTTGGGTCTTCTCGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgaaattatgtataatgcctgcttattgatgttatttctctttgcaaggaagACTCTGGTTTTGTGCCCCTATTTGTATATGCCATATTTGGGTCTTCTCGCCAGCTTGCAGTAGGTCCGGTGGCATTGGTTTCTCTCTTGGTCTCTAATGT
                          tattgat  putative branch site (score: 3)
                                tgttatttctcttt  CT-rich tract
     aaattatgtataat  TA-rich tract