Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgagggatcttttgtttgtgtattaaatttgttgataatgtaactttgacatactttttattggttttatgggaatatcattttacattaatgttacttctgtgaatttgaaaaattaattgcaatgaatctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG

Basic information

species Glycine max
transcript GLYMA02G10170.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0019g01240.t01 (Vitis vinifera), 3'ss of exon 1
gtacatgagggatcttttgtttgtgtattaaatttgttgataatgtaactttgacatactttttattggttttatgggaatatcattttacattaatgttacttctgtgaatttgaaa-aattaattgcaatgaatctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG
                        |||| |||     |||  ||      |      |  |||  | |  |   ||       || | | | ||  | ||   |     | | ||| | || | |||||||||     || |||||||||||||| ||||||||||| ||  | |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||
------------------------gtatcaaa-----tgaggattctttctatgtgaatgtttagtagaatgcttgtattctacagtctgcctttttcttgtattc---agtctgagataactgattgcaatgttatcttctagGCTGGATTTGCAGGAGATGATGCTCCTAGGGCTGTGTTCCCCAGCATTGTAGGTCGTCCCCGTCACACTGGTGTAATGGTTGGCATGGGCCAGAAAGATG

upper sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 2
lower sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
gtacatgagggatcttttgtttgtgtattaaatttgttgataatgtaactttgacatactttttattggttttatgggaatatcattttacattaatgttacttctgtgaatttgaaaa-attaattgcaatga----atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG
                                          || |||||| | | |        | ||  |   | |     |    | ||     |||  |   |  ||  |||        || ||  ||      | |  | ||||||| |||||||| ||||||||||| || |||||||| |||  ||| || || || || || ||||| ||||||||||| || |||||||| ||     
---------------------------------------tccatttaacttgggcgt--------tgggcctggcgtgggccccgcgctgcagcg-cgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----

upper sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S381_21V6.1 (Physcomitrella patens), 3'ss of exon 2
gtacatgagggatcttttgtttgtgtattaaatttgttgataatgtaactttgacatactttttattggttttatgggaatatcattttacattaatgttacttctgtgaatttgaaaaattaatt--gcaatgaatctt----tgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG
                                                | ||   | | || |  || | |   |      |    ||  | |||      | || ||   | || || ||| ||     ||||   | |    || |||| || || || ||||| ||||| || || ||||||||||||||||| || || || ||  | ||||||||||||||||| |||||||| || || || |
---------------------------------------------ctgcattcttagatttgtagtttgctaccttaatgcagtccttcgcgttag----gcgtcagttgttgtggaagattgatccaaaaatggtgcatgtaatgcagGCCGGTTTCGCGGGAGACGATGCTCCCCGCGCTGTGTTTCCCAGCATCGTCGGACGGCCAAGGCACACTGGTGTGATGGTGGGCATGGGACAGAAGGACG

upper sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
gtacatgagggatcttttgtttgtgtattaaatttgttgataatgtaactttgacatactttttattggttttatgggaatatcattttaca-ttaatgttacttctgtgaatttgaaaaattaattgcaatgaatctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG
                                         ||  | |  ||| | |||  |  |||  | | ||      |||  | |  | || |  |  ||| |   |   |||  ||| |  |||   || | | || ||||||| || ||||||||||| ||||| || || |||||||| ||||| || || || ||  | ||||||||||||||||| || ||||| || || || |
-----------------------------------------aaccttaacttg-cgtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgagtaatcacgtgcg--gattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG

upper sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S198_157V6.3 (Physcomitrella patens), 3'ss of exon 2
----------------gtacatgagggatct----tttgtttgtgtattaaatttgttgataatgtaactttgacata---ctttttattggttttatgggaatatcat-------tttacattaatgttacttctgtga----------atttgaaaaatta--attgcaatgaatctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG
                 |  |||| | || |    | |   | |||  | || | | |   |||  ||    |   ||   | | | || ||       ||    | ||       || ||||   || ||  |||||||          |  | |||  ||   ||||    || | | || ||||||| || ||||||||||| ||||| || || |||||||| ||||| || || || ||  | ||||||||||||||||| || ||||| || || || |
gtatgatattaactgttttgatgatgcatttgtattctccctatgtgatgaagtggcttgcaataaaatgcagttctaaagcatgtcatgggccaagctgggtcgttatcgtcttcttcacatcg-tggtatctctgtgatcggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG

upper sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S198_157V6.1 (Physcomitrella patens), 3'ss of exon 2
gtacatgagggatcttttgtttgtgtattaaatttgttgataatgtaactttgacatactttttattggttttatgggaatatcattttacattaatgttacttctgtgaatttgaaaaatta--attgcaatgaatctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG
                                             |        |    |  |||| |  ||  |    | ||| |  ||  |   || | |  |    ||  | |||  ||   ||||    || | | || ||||||| || ||||||||||| ||||| || || |||||||| ||||| || || || ||  | ||||||||||||||||| || ||||| || || || |
-----------------------------------------gtcatgggccaagctgggtcgttatcgtcttctt---cacatcgtggtatctctgtgat-cggcacaaaacctaaaatgttggtattgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG

upper sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S381_18V6.2 (Physcomitrella patens), 3'ss of exon 2
gtacatgagggatcttttgtttgtgtattaaatttgttgataatgtaactttgacatactttttattggttttatgggaatatcattttacattaatgtt-acttctgtgaatttgaaaaattaattgcaatgaatctt-tgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG
                                        || | | |  |   || |    |      || | ||   |  |||| ||  |    |||| |   |  | ||  || |  | ||||     || || |  || |||| || || || ||||||||||| || || ||||||||||||||||| || || || ||  | ||||||||||||||||| |||||||| || || || |
---------------------------------------gtagtatcaaatctccacaaccgtc-----ttctgtgtctaggtcatgttggacctgtgtttaggccaatcaacatgtaggagtaat-atggtgcatgtaatgcagGCCGGTTTCGCGGGAGATGATGCTCCCCGCGCTGTGTTTCCCAGCATCGTCGGACGGCCAAGGCACACTGGTGTGATGGTGGGCATGGGACAGAAGGACG

upper sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ35077 (Selaginella moellendorffii), 3'ss of exon 1
gtacatgagggatcttttgtttgtgtattaaatttgttgataatgtaactttgacatactttttattggttttatgggaatatcattttacattaatgttacttct-gtgaatttgaaaaattaattgcaatgaatctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG
                                                                                     |       |   |  | |||| ||| ||||  |    |    |   ||  | |||| ||||||||||||| ||||| ||||| ||  | || ||||||||||||||||| || || ||    ||||| || || |||||||| ||||| || || ||||
------------------------------------------------------------------------------------gtgcgctcctggcgcgatttcttgtggattttga----tccggggggtgtgtttttgcagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717795|gb|BW668932.1|BW668932
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|9264513|gb|BE352660.1|BE352660
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|19347448|gb|BM892328.1|BM892328
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|12773998|gb|BG238925.1|BG238925
EST:     GGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: GGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|7146747|gb|AW508669.1|AW508669
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|209721507|gb|BW671687.1|BW671687
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|26058684|gb|CA801598.1|CA801598
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|14125829|gb|BG790267.1|BG790267
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|209700254|gb|BW664479.1|BW664479
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|21479734|gb|BQ576417.1|BQ576417
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGTTTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|13181560|gb|BG352900.1|BG352900
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|7232232|gb|AW567589.1|AW567589
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|26058538|gb|CA801452.1|CA801452
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|209717612|gb|BW679692.1|BW679692
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|7030276|gb|AW460059.1|AW460059
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|8283152|gb|BE020713.1|BE020713
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|8282939|gb|BE020500.1|BE020500
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|13181648|gb|BG352988.1|BG352988
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|17021518|gb|BM092552.1|BM092552
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|192326949|gb|FK019226.1|FK019226
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|213599164|gb|DB962243.1|DB962243
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|213599862|gb|DB973906.1|DB973906
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGAAGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|24135382|gb|BU925883.1|BU925883
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTTTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|24136171|gb|BU926681.1|BU926681
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|213594404|gb|DB967988.1|DB967988
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|12496498|gb|BG047094.1|BG047094
EST:     TGAGGATATTCAACACTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: TGAGGATATTCAAC-CTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|17023480|gb|BM094514.1|BM094514
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|151400375|gb|EV270189.1|EV270189
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|12772028|gb|BG236955.1|BG236955
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|213613943|gb|DB960936.1|DB960936
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|213589283|gb|DB967762.1|DB967762
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|7686433|gb|AW757081.1|AW757081
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|209701316|gb|BW655911.1|BW655911
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|209698678|gb|BW652479.1|BW652479
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|15812971|gb|BI785246.1|BI785246
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|213600758|gb|DB968806.1|DB968806
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGAAGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|27426342|gb|CA937862.1|CA937862
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|209701528|gb|BW667349.1|BW667349
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|213587909|gb|DB971398.1|DB971398
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|42722420|gb|CK768322.1|CK768322
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA
EST: gi|15286966|gb|BI470857.1|BI470857
EST:     CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAG                         GCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTTTT
genomic: CTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGgtacatgagg ... atctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacattaatgttacttctgtgaatttgaaaaattaattgcaatgaatctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG
                              aattaat  putative branch site (score: 3)
                                              tctttgt  putative PPT
                     aatttgaaaaattaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacatgagggatcttttgtttgtgtattaaatttgttgataatgtaactttgacatactttttattggttttatgggaatatcattttacattaatgttacttctgtgaatttgaaaaattaattgcaatgaatctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG