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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagactttcattatcttctatcctgtgttcaagatatattttagagaactggtccatgcatgagagatataaattttgtactagaatgcatgatcatgttttgatttttttattgactcttgttttacagCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTTAGTCCTG

Basic information

species Glycine max
transcript GLYMA02G09030.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G09030.3 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0072g00630.t01 (Vitis vinifera), 3'ss of exon 1
gtgagactttcattatcttctatcctgtgttcaagatatattttagagaactggtccatgcatgagagatataaattttgtactagaatgcatgatcatgttttgatttttttattgactcttgttttacagCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTTAGTCCTG
         | |    ||  | |  | |||| || | |        |||| |   |  |  ||  | |||         |  |||  ||   ||| |  ||| || ||| ||| |||        ||||||||| ||  |  ||||||||||||| ||||| ||||| ||||| ||||| || ||  |||| |||||||| |||||||| ||||| ||||
--------cttaaaggctcatgtgtt-tgttgaaaaga-------aagaatttcccattatattggggat---------gggctatgat---tgacctagttctggtttgtttgttg--------tttacagccagGGCCTCGGGATGGAACCATTCAGTGCTTCATTAAGAGGGACAAGTCCAACTTGACTTACCACCTTTTCCTTTGCCTTAGCCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26057345|gb|CA800259.1|CA800259
EST:     CCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTGAAGCAG                         CCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCT
genomic: CCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTGAAGCAGgtgagacttt ... tgttttacagCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCT
EST: gi|209724879|gb|BW669568.1|BW669568
EST:     CCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTGAAGCAG                         CCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCT
genomic: CCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTGAAGCAGgtgagacttt ... tgttttacagCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCT
EST: gi|213597878|gb|DB958259.1|DB958259
EST:     CCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTGAAGCAG                         CCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCT
genomic: CCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTGAAGCAGgtgagacttt ... tgttttacagCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtactagaatgcatgatcatgttttgatttttttattgactcttgttttacagCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTTAGTCCTG
                                   tattgac  putative branch site (score: 2)
                                         ctcttgtttt  CT-rich tract
                 atcatgttttgatttt  TA-rich tract