1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aaatagtagagagcgtattagagattgaattgttagcattcctcttgttctattaacataatctgttgatagatttggctaacactgcaactgatttcagGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATAGTGATGATTTGGAAAGTGAGTTTGATATTGGGAGCGTGTTCTCTGCTCGCCTTAACTATGG
species | Glycine max |
transcript | GLYMA02G08920.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGTAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAGAG GTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATAGTGATGATTTGGEST: gi|209720456|gb|BW671789.1|BW671789
genomic: GGGTAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAGgtgaagaagc ... ctgatttcagGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATAGTGATGATTTGG
EST: GGGTAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAG GTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATAGTGATGATTTGGEST: gi|213589781|gb|DB959406.1|DB959406
genomic: GGGTAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAGgtgaagaagc ... ctgatttcagGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATAGTGATGATTTGG
EST: GGGTAACCGAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAG GTAGTCCTAGAGTTGAGGGTGATGAA
genomic: GGGTAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAGgtgaagaagc ... ctgatttcagGTAGTCCTAGAGTTGAGGGTGATGAA
tgttctattaacataatctgttgatagatttggctaacactgcaactgatttcagGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATAGTGATGATTTGGAAAGTGAGTTTGATATTGGGAGCGTGTTCTCTGCTCGCCTTAACTATGG
tattaacataatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatagtagagagcgtattagagattgaattgttagcattcctcttgttctattaacataatctgttgatagatttggctaacactgcaactgatttcagGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATAGTGATGATTTGGAAAGTGAGTTTGATATTGGGAGCGTGTTCTCTGCTCGCCTTAACTATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactgca