1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctaaaataaagctactcatcatggcagtgtattttcatggtcatactctctatccatatcaatttatatattagatgctgttttccttaacatttagcagTGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGC
species | Glycine max |
transcript | GLYMA02G08170.1 |
intron # | 2 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTAC TGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATAEST: gi|16106178|gb|BI893918.1|BI893918
genomic: AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTACgtatccttac ... catttagcagTGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATA
EST: AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTAC TGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATAEST: gi|151403573|gb|EV273383.1|EV273383
genomic: AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTACgtatccttac ... catttagcagTGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATA
EST: AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTAC TGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATAEST: gi|5509566|gb|AI856124.1|AI856124
genomic: AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTACgtatccttac ... catttagcagTGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATA
EST: AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTAC TGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATAEST: gi|151407825|gb|EV277640.1|EV277640
genomic: AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTACgtatccttac ... catttagcagTGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATA
EST: AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTAC TGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATA
genomic: AAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTACgtatccttac ... catttagcagTGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATA
ctctctatccatatcaatttatatattagatgctgttttccttaacatttagcagTGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGC
ttccttaac putative branch site
tatccatatcaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaaataaagctactcatcatggcagtgtattttcatggtcatactctctatccatatcaatttatatattagatgctgttttccttaacatttagcagTGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGC
- aaaataa
- - - - - -ctactca
- - - - - - - - - -catggca
- - - - - - - - - - - - - - - - - -catggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - catatca