1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgaggtctttgctttgttgatagttgtagttgaatatgagttcatacttcattacaattatccataccttgttgattccatgattgtatgtattgtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTACCTAGTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTAT
species | Glycine max |
transcript | GLYMA02G08010.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAAAGAAAATTGTTGAA-TTAGTACG GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCCCGTCCTGCTTCTTTAEST: gi|298163689|gb|HO012422.1|HO012422
genomic: TAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: TAAAGAAAATTGTTGAATTTAGTACG GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTAEST: gi|19452727|gb|BM954137.1|BM954137
genomic: TAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: AAGAAAATTGTTGAATTTAGTACG GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: AAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
cattacaattatccataccttgttgattccatgattgtatgtattgtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTACCTAGTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTAT
tgttgat putative branch site (score: 4)
attgtatgtattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggtctttgctttgttgatagttgtagttgaatatgagttcatacttcattacaattatccataccttgttgattccatgattgtatgtattgtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTACCTAGTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA