1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttttttcagtttttgatgaaagccttagtgatctgtctttaaatgtcatattgctgctctctctccctctaatttcttgttttgtttcagACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGATGTTCGTGATAAGGAACAAGTTATTTCAAGAATGAAAGCAGCCGTTGCCA
species | Glycine max |
transcript | GLYMA02G07910.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAG ACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGAGAATATGGATEST: gi|209718245|gb|BW657850.1|BW657850
genomic: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAGgttttttcag ... tttgtttcagACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGAT
EST: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAG ACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGAGAATATGGATEST: gi|207795810|gb|GD764077.1|GD764077
genomic: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAGgttttttcag ... tttgtttcagACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGAT
EST: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAG ACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGATEST: gi|192299740|gb|FG987785.1|FG987785
genomic: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAGgttttttcag ... tttgtttcagACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGAT
EST: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAG ACTGTTCAGATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGATEST: gi|209700023|gb|BW656204.1|BW656204
genomic: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAGgttttttcag ... tttgtttcagACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGAT
EST: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAG ACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGAGAATATGGATEST: gi|16997151|gb|BM086523.1|BM086523
genomic: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAGgttttttcag ... tttgtttcagACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGAT
EST: CAGTGGATACACTAAAGCAATCAACAAG ACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGATEST: gi|209728113|gb|BW655348.1|BW655348
genomic: CAGTGGATACACTAAAGCAATCAACAAGgttttttcag ... tttgtttcagACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGAT
EST: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAG ACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGAGAATATGGATEST: gi|209721609|gb|BW671736.1|BW671736
genomic: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAGgttttttcag ... tttgtttcagACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGAT
EST: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAG ACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGAGAATATGGATEST: gi|26045600|gb|CA783137.1|CA783137
genomic: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAGgttttttcag ... tttgtttcagACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGAT
EST: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAG ACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGATEST: gi|298187418|gb|HO034567.1|HO034567
genomic: GTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAGgttttttcag ... tttgtttcagACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGAT
EST: ACACTAAAGCAATCAACAAG ACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGAGAATATGGAT
genomic: ACACTAAAGCAATCAACAAGgttttttcag ... tttgtttcagACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGAT
tctttaaatgtcatattgctgctctctctccctctaatttcttgttttgtttcagACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGATGTTCGTGATAAGGAACAAGTTATTTCAAGAATGAAAGCAGCCGTTGCCA
ctctaat putative branch site (score: 3)
ctgctctctctccctc CT-rich tract
taatttcttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttttcagtttttgatgaaagccttagtgatctgtctttaaatgtcatattgctgctctctctccctctaatttcttgttttgtttcagACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGATGTTCGTGATAAGGAACAAGTTATTTCAAGAATGAAAGCAGCCGTTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA