Sequence
atgc intronic sequence ATGC exonic sequence...tataagaaaagaataaataaatagatgaatacatatatgaattaatgattcaatatttaaatagcaaattatatattattttgtttgtttgtttgtttagTTGGATGACTGGGTTCTATGCCGGATATACAAGAAGACCAAACATGCTGTATCTCCAACCACAGAGGCAGCATCATCAACACTGCAAGTGATCAATGAGC
Basic information
species | Glycine max |
transcript | GLYMA02G07700.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207737930|gb|GD717402.1|GD717402EST: GCTTTGTTGACACCAATAGACCCATTAGGATCAAAGACACCTCCATGAGG TTGGATGACTGGGTTCTATGCCGGATATACAAGAAGACCAAACATGCTGTA
genomic: GCTTTGTTGACACCAATAGACCCATTAGGATCAAAGACACCTCCATGAGGgtgagtcccc ... gtttgtttagTTGGATGACTGGGTTCTATGCCGGATATACAAGAAGACCAAACATGCTGTA
EST:
gi|254344527|gb|GR851224.1|GR851224EST: GCTTTGTTGACACCAATAGACCCATTAGGATCAAAGACACCTCCATGAGG TTGGATGACTGGGTTCTATGCCGGATATACAAGAAGACCAAACATGCTGTA
genomic: GCTTTGTTGACACCAATAGACCCATTAGGATCAAAGACACCTCCATGAGGgtgagtcccc ... gtttgtttagTTGGATGACTGGGTTCTATGCCGGATATACAAGAAGACCAAACATGCTGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattcaatatttaaatagcaaattatatattattttgtttgtttgtttgtttagTTGGATGACTGGGTTCTATGCCGGATATACAAGAAGACCAAACATGCTGTATCTCCAACCACAGAGGCAGCATCATCAACACTGCAAGTGATCAATGAGC
tttgttt CT-rich tract
aatatttaaatagcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tataagaaaagaataaataaatagatgaatacatatatgaattaatgattcaatatttaaatagcaaattatatattattttgtttgtttgtttgtttagTTGGATGACTGGGTTCTATGCCGGATATACAAGAAGACCAAACATGCTGTATCTCCAACCACAGAGGCAGCATCATCAACACTGCAAGTGATCAATGAGC
- -aagaaaa
- - - - - - - aaataaa