Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaaacaattctctgttttgttttcaagtttctctaccaatttgttttcccagttttgttatgtgaccctttctttggctgtgattggcactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGAAACAGAACCGGGCAACCTTACATTTTGCAAACTAATGTGTTCACTGGTG

Basic information

species Glycine max
transcript GLYMA02G07610.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07610.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ18918 (Selaginella moellendorffii), 3'ss of exon 2
gtaagaaaaacaattctctgttttgttttcaagtttctctaccaatttgttttcccagttttgttatgtgaccctttctttggctgtgattggcactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGAAACAGAACCGGGCAACCTTACATTTTGCAAACTAATGTGTTCACTGGTG------
|||||||||   ||||||  || | |  |    |  |  |    | || |  |||    |||             ||  || | |||        ||   ||| |  |||||| | ||      || ||||| || ||||||||||||||||||||||  | |||||||||||||||| | || || ||  | ||  |    |      
gtaagaaaacttattctccattctatcctgggataaccttgttgaattttgctcc----tttac-----------tttcttagatgt--------cttcacagATGCCATCCAAAGAC------CACGATGAGATTGACTTTGAGTTCTTGGGAAACACCAGCGGGCAACCTTACATTGTCCACACCAACATCTTTGCAAACGGAACAG

upper sequence: GLYMA02G07610.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ11520 (Selaginella moellendorffii), 3'ss of exon 2
gtaagaaaaacaattctctgttttgttttcaagtttctctaccaatttgttttcccagttttgttatgtgaccctttctttggctgtgattggcactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGAAACAGAACCGGGCAACCTTACATTTTGCAAACTAATGTGTTCACTGGTG------
|||||||||   ||||||  || | |  |    |  |  |    | || |  |||    |||             ||  || | |||        ||   ||| |  |||||| | ||      || ||||| || ||||||||||||||||||||||  | ||| |||||||||||| | || || ||  | ||  |    |      
gtaagaaaacttattctccattctatcctgggataaccttgttgaattttgctcc----tttac-----------tttcttagatgt--------cttcacagATGCCATCCAAAGAC------CACGATGAGATTGACTTTGAGTTCTTGGGAAACACCAGCGGCCAACCTTACATTGTCCACACCAACATCTTTGCAAACGGAACAG

upper sequence: GLYMA02G07610.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ11526 (Selaginella moellendorffii), 3'ss of exon 2
gtaagaaaaacaattctctgttttgttttcaagtttctctaccaatttgttttcccagttttgttatgtgaccctttctttggctgtgattggcactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGAAACAGAACCGGGCAACCTTACATTTTGCAAACTAATGTGTTCACTGGTG
|||||||||   ||||||  || | |  | |  |  |       | || |  |||    |||             ||  || | |||        ||   ||| |  |||||| | ||      || ||||| || ||||||||||||||||||||||  | ||| |||||||||||| | || || ||  | ||        
gtaagaaaacttattctccattctatcctgagataacctcgttgaattttgctcc----tttac-----------tttcttagATGT--------CTTCACAGATGCCATCCAAAGAC------CACGATGAGATTGACTTTGAGTTCTTGGGAAACACCAGCGGCCAACCTTACATTGTCCACACCAACATCTTTG------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19453236|gb|BM954646.1|BM954646
EST:     ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... cactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|213601484|gb|DB970414.1|DB970414
EST:     ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... cactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|7693504|gb|AW761596.1|AW761596
EST:     ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... cactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|9900707|gb|BE609675.1|BE609675
EST:     ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... cactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|7283319|gb|AW595927.1|AW595927
EST:     ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... cactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|17153838|gb|BM143771.1|BM143771
EST:     ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... cactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|19452715|gb|BM954125.1|BM954125
EST:     ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... cactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|8827506|gb|BE211236.1|BE211236
EST:     ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... cactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|22524132|gb|BU082943.1|BU082943
EST:     ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... cactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|10846099|gb|BF071249.1|BF071249
EST:     ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATACACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... cactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|10709298|gb|BF009022.1|BF009022
EST:     ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... cactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|11688424|gb|BF596100.1|BF596100
EST:     ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TGATCATCCACAAACTCAGAACATGAT
genomic: ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... cactatgcagTTATCATCCACAAACTCAGAACATGAT
EST: gi|14990653|gb|BI316326.1|BI316326
EST:     ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... cactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
EST: gi|151406547|gb|EV276362.1|EV276362
EST:     ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAATTGGTTCCTGGTGATTCAGCTGGCACAGTCACTGCTTTCTATgtaagaaaaa ... cactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttcccagttttgttatgtgaccctttctttggctgtgattggcactatgcagTTATCATCCACAAACTCAGAACATGATGAAATAGACTTTGAGTTCTTGGGAAACAGAACCGGGCAACCTTACATTTTGCAAACTAATGTGTTCACTGGTG
          ttttgttat  TA-rich tract