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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaacaacgacgtttggcatattaattagtcttcctttcttttgttttcgctttaccaaattattttcccttctttcatacaatatttagttatacattgattgacttaaaattcatcattaatttctatctttcagAGGAGAAGTTGGAAAATGGATTGCATTCATCGCAGTCGTGCTGAGGCTTTTCTTCCCTAGACATTTTCCTG

Basic information

species Glycine max
transcript GLYMA02G06850.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06850.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0207g00220.t01 (Vitis vinifera), 3'ss of exon 2
gtaattaacaacgacgtttggcatattaattagtcttcctttcttttgttttcgctttaccaaattattttcccttctttcatacaatatttagttatacattgattgacttaaaattcatcattaatttctatctttcagAGGAGAAGTTGGAAAATGGATTGCATTCATCGCAGTCGTGCTGAGGCTTTTCTTCCCTAGACATTTTCCTG
                                           |||  | ||    | | |  |   ||||    ||||| ||      |||  | |||  || ||| |  || || | ||      ||  |||  | ||||||||| ||||||||||||||||| ||||| ||| | || || ||||||||||||||||||||||| || |
------------------------------------------gtttcatcttttactgatcgcacacttttattctcttttat------ttttctgatatctt-attaa--tagaactaatt-----ttattatggtccagAGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttagttatacattgattgacttaaaattcatcattaatttctatctttcagAGGAGAAGTTGGAAAATGGATTGCATTCATCGCAGTCGTGCTGAGGCTTTTCTTCCCTAGACATTTTCCTG
                                   cattaat  putative branch site (score: 3)
                                         tttctatctttc  CT-rich tract
                        ttaaaattcatcatta  TA-rich tract