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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacgtataatattatttttacactcaaaatagttttcttctttttctgtaggactgcactagatgtggaggagggggggcttttattgcatttttaatgctatatattaaatttgcgtatcttgctctcttgagtataaaagaagactaaatcaaatgattagtttacttactatgtgtttggtttcttggtccagGGACTACATGCCATTAATTTGGGTGACAGTGGGTTCATCGTGGTTAGAGATGGATGCACCATTTTCAGGTCCCCAGTTCAACAGCATGACTTCAATTTTA

Basic information

species Glycine max
transcript GLYMA02G06520.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06520.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0023g01400.t01 (Vitis vinifera), 3'ss of exon 3
gtatacgtataatattatttttacactcaaaatagttttcttctttttctgtaggactgcactagatgtggaggagggggggcttttattgcatttttaatgctatatattaaatttgcgtatcttgctctcttgagtataaaagaagactaaatcaaatgattagtttactt------actatgtgtttggtttcttggtccagGGACTACATGCCATTAATTTGGGTGACAGTGGGTTCATCGTGGTTAGAGATGGATGCACCATTTTCAGGTCCCCAGTTCAACAGCATGACTTCAATTTTA
                                                                                                       | | |||  | ||||  ||  || || | || |  |  ||| |  |   |||  | |  ||  ||||| |      | |||   || |  | |||    |||||||| || ||||||||| | || |||||||| || || |||||| ||||||||||||| |||||    ||||| || || |||||||  |||||||| |
------------------------------------------------------------------------------------------------------atctttatgcactttggataatttactttattcaacagtaaaaacaaaggaat--acttgttgctttacctgagtggattattcatt-gactcctttcagcagGGACTCCAAGCCATTAATCTAGGGGACAGTGGATTTATAGTGGTTCGAGATGGATGCACAATTTTTCAATCCCCTGTGCAGCAGCATGGGTTCAATTTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagactaaatcaaatgattagtttacttactatgtgtttggtttcttggtccagGGACTACATGCCATTAATTTGGGTGACAGTGGGTTCATCGTGGTTAGAGATGGATGCACCATTTTCAGGTCCCCAGTTCAACAGCATGACTTCAATTTTA
                        tacttac  putative branch site (score: 1)
                                          tttctt  putative PPT
      taaatcaaatgatta  TA-rich tract