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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtgtttgtttatacaataggattttgtttttatgagcaatgaattggcgttcctttgaatagcaaagcagtaaggagtgcatgatagcaactactttgaaattgtgaaactgtttatttatttggcagGGACTTTATGGACCTTCTGTTGTCCCCAGCTTCTAAGGTTTTGAACAACTGGTTTGAG

Basic information

species Glycine max
transcript GLYMA02G06340.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06340.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0023g01780.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtgtgtttgtttatacaataggattttgtttttatgag--caatgaattggcgttcctttgaatagcaaagcagtaaggagtgcatgatagcaactactttgaaattgtgaaactgtttatttatttgg-cagGGACTTTATGGACCTTCTGTTGTCCCCAGCTTCTAAGGTTTTGAACAACTGGTTTGAG
                            |    ||  || |     | ||||| | ||    |||| || |       |  |          |  ||||  |||||  | | |     | ||  || |||||| ||||||||| ||||||||| | ||| |||| || || || |||||||| ||||||||||||
---------------------------atccacttcaatcaagttcacgaatttgtgt----ttgagtaacttgattttttgtgagttgaagtctcaac--ctttgctaatat----ttcttggttgatttggacagGGACTTCATGGACCTTTTATTGGCCCCTGCATCAAAAGTTTTGAATAACTGGTTTGAG

upper sequence: GLYMA02G06340.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0023g01790.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtgtgtttgtttatacaataggattttgtttttatgagcaatgaattggcgttcctttgaatagcaaagcagtaaggagtgcatgatagcaactactttgaaattgtgaaactgtttatttattt-ggcagGGACTTTATGGACCTTCTGTTGTCCCCAGCTTCTAAGGTTTTGAACAACTGGTTTGAG
                           |  | || | ||      | ||||     ||  ||||||| |  |    | || | |    | ||   |||  ||   ||      ||||    |||||||| | |||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||
---------------------------tcctcttataataccatgtcaatt---cctctcttgaataacttatggctgagtatttgtagttacttactctttcttaac-----aacttacaatttattttgacagGGACTTTGTGGACCTTCTGTTGTCCCCAACTTCAAAGGTTTTGAACTACTGGTTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208101011|gb|GD899476.1|GD899476
EST:     TGGGCAAGTTGTCTGCGACAGGTGTCTTCCTTGGGGCAAAAGGATATGGT                         GGACTTTATGGACCTTCTGTTGTCCCCAGCTTCTAAGGTTTTGAACAACTG
genomic: TGGGCAAGTTGTCTGCGACAGGTGTCTTCCTTGGGGCAAAAGGATATGGTgtaagtgtgt ... tatttggcagGGACTTTATGGACCTTCTGTTGTCCCCAGCTTCTAAGGTTTTGAACAACTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagtgcatgatagcaactactttgaaattgtgaaactgtttatttatttggcagGGACTTTATGGACCTTCTGTTGTCCCCAGCTTCTAAGGTTTTGAACAACTGGTTTGAG
                                       tttattt  CT-rich tract
                                 aaactgtttatttatt  TA-rich tract