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...ttagtttctgtcagtcatagagagaatgttaaaaagagagtctctaataattaatgatacggttagttatgtttttggttttgcttaaccggttaattagAGTGGCTGGACTGGTTATCTTTTCGAGTATGATCAAAAG
species | Glycine max |
transcript | GLYMA02G05950.1 |
intron # | 2 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: CGACTTCCAACTGCTACGCTTTCGACAATTCTAGTCGCATTGATGATTTC AGTGGCTGGACTGGTTATCTTTTCGAGTATGATCAAAAGEST: gi|192329022|gb|FK021404.1|FK021404
genomic: CGACTTCCAACTGCTACGCTTTCGACAATTCTAGTCGCATTGTTGATTTCgtatccttca ... ggttaattagAGTGGCTGGACTGGTTATCTTTTCGAGTATGATCAAAAG
EST: CGACTTCCAACTGCTACGCTTTCGACAATTCTAGTCGCATTGTTGATTTC AGTGGCTGGACTGGTTATCTTTTCGAGTATGATCAAAAG
genomic: CGACTTCCAACTGCTACGCTTTCGACAATTCTAGTCGCATTGTTGATTTCgtatccttca ... ggttaattagAGTGGCTGGACTGGTTATCTTTTCGAGTATGATCAAAAG
aataattaatgatacggttagttatgtttttggttttgcttaaccggttaattagAGTGGCTGGACTGGTTATCTTTTCGAGTATGATCAAAAG
ttgcttaac putative branch site
ttagttatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagtttctgtcagtcatagagagaatgttaaaaagagagtctctaataattaatgatacggttagttatgtttttggttttgcttaaccggttaattagAGTGGCTGGACTGGTTATCTTTTCGAGTATGATCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - -ttctgtc
- - - - - - - - - - - - - - - aaaaaga