1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatatgatattgattgttacctcctgaacttggaacttgatgtaaggtttgtgcgaagttgaatggatgaacaattctttatcctcgccttgtctctttacagAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGTCAAAAGTGCCATGGATGCTTCATATGGTGATATGTCAAATGATTCTGCT
species | Glycine max |
transcript | GLYMA02G05670.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAG AACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGTEST: gi|209716206|gb|BW654254.1|BW654254
genomic: GGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAGgtatatgata ... ctctttacagAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGT
EST: TCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAG AACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGTEST: gi|207768906|gb|GD741039.1|GD741039
genomic: TCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAGgtatatgata ... ctctttacagAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGT
EST: TCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAG AACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGTEST: gi|213611913|gb|DB958923.1|DB958923
genomic: TCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAGgtatatgata ... ctctttacagAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGT
EST: TCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAG AACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGTEST: gi|193712022|gb|FK643473.1|FK643473
genomic: TCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAGgtatatgata ... ctctttacagAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGT
EST: TCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAG AACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGTEST: gi|208271204|gb|GE068294.1|GE068294
genomic: TCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAGgtatatgata ... ctctttacagAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGT
EST: GGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAG AACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGTEST: gi|193410767|gb|FK378910.1|FK378910
genomic: GGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAGgtatatgata ... ctctttacagAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGT
EST: TCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAG AACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGT
genomic: TCTGTGGCTGGGAGAAATAAACAAGGGATAGCATTTCGTCAAGTGGAAAGgtatatgata ... ctctttacagAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGT
ttgtgcgaagttgaatggatgaacaattctttatcctcgccttgtctctttacagAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGTCAAAAGTGCCATGGATGCTTCATATGGTGATATGTCAAATGATTCTGCT
ttctttatcctcgcct CT-rich tract
aattctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatgatattgattgttacctcctgaacttggaacttgatgtaaggtttgtgcgaagttgaatggatgaacaattctttatcctcgccttgtctctttacagAACGAGTTTTTTGTCTCCTATATTAAAATGCAATAGACAACTTCAGTTGGTCAAAAGTGCCATGGATGCTTCATATGGTGATATGTCAAATGATTCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA