Sequence
atgc intronic sequence ATGC exonic sequence...tcaaacataatacattccaagagaaaagtgaaaccaattaagtccacaaaagtctcatcttagctttacaacatgtaatcgagtgtgtgtgtgtgtgcagGAGGAAGGATGGGTGGTATGCAGAGCATTCAAGAAAAGAACAACAAACGGCCAAACAAAGACTATTGAACGATGGGATCGAAACTACTTATACGATGAAC
Basic information
species | Glycine max |
transcript | GLYMA02G05620.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G05620.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os03g03540.1 (Oryza sativa), 3'ss of exon 2
-tcaaacataatacattccaagagaaaagtgaaaccaattaagtccacaaaagtctcatcttagctttacaacatgtaatcgagtgtgtgtgtgtgt---gcagGAGGAAGGATGGGTGGTATGCAGAGCATTCAAGAAAAGAACAACAAACGGCCAAACAAAGACTATTGAACGATGGGATCGAAACTACTTATACGATG--AAC-
| | | || || | |||| | || | | | || | || |||| || | || ||| | || ||||||| ||||| |||||||||||||| ||| ||||||||||||| || || | | | | | | || ||||| ||| ||| |||| |||
gttattaccacaacgttttacatgaaatatttaatc---ttaatcttcgggagactcaaacaccaccta-agtatctaactttatttgcatgtgtgtactacagGAAGAAGGATGGGTGGTGTGCCGAGCATTCAAGAAGAGGACGGCGTATCCGGCGAGGAGCATGGTGGAGACGTGGGACT---ACTCCTTGCACGAGCGCAACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaaaagtctcatcttagctttacaacatgtaatcgagtgtgtgtgtgtgtgcagGAGGAAGGATGGGTGGTATGCAGAGCATTCAAGAAAAGAACAACAAACGGCCAAACAAAGACTATTGAACGATGGGATCGAAACTACTTATACGATGAAC
tttacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcaaacataatacattccaagagaaaagtgaaaccaattaagtccacaaaagtctcatcttagctttacaacatgtaatcgagtgtgtgtgtgtgtgcagGAGGAAGGATGGGTGGTATGCAGAGCATTCAAGAAAAGAACAACAAACGGCCAAACAAAGACTATTGAACGATGGGATCGAAACTACTTATACGATGAAC
-caaacat
- - - - - - cattcca
- - - - - - - - - -agagaaaa
- - - - - - - - - - - - - - tgaaacc
- - - - - - - - - - - - - - - - - - - - - -ccacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtgtg