1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaggaggagcactgatgccaaccacaatttcttgtgatcttccttcatatccagcctcatgctgactgctatgtactgaactatacctatatgctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAGCAAAGAACAGGAACAAACCAGGTCAAGAAGCAGCATTGTGACTACTCAA
species | Glycine max |
transcript | GLYMA02G05550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAG ATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAGEST: gi|51336481|gb|CO980347.1|CO980347
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAGgtaggaggag ... atgctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
EST: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAG ATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAGEST: gi|58017287|gb|CX704029.1|CX704029
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAGgtaggaggag ... atgctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
EST: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAG ATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAGgtaggaggag ... atgctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
catatccagcctcatgctgactgctatgtactgaactatacctatatgctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAGCAAAGAACAGGAACAAACCAGGTCAAGAAGCAGCATTGTGACTACTCAA
tgctgac putative branch site (score: 2)
aactata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaggagcactgatgccaaccacaatttcttgtgatcttccttcatatccagcctcatgctgactgctatgtactgaactatacctatatgctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAGCAAAGAACAGGAACAAACCAGGTCAAGAAGCAGCATTGTGACTACTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC