Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatttttatgaagcagcaagtctattggtttgaccgtgtactttgtttttcataatttaaatttgttcatttttttgtggtgggtgcacatgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCAAACCATAGCCGTTTGTCCATAGCCACTTTTCAAAACCCAGCACCAA

Basic information

species Glycine max
transcript GLYMA02G05450.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05450.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os04g56700.1 (Oryza sativa), 3'ss of exon 2
ttatttttatgaagcagcaagtctattggtttgaccgtgtactttgtttttcataatttaaatttgttcatttttttgtggtgggtgcacatgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCAAACCATAGCCGTTTGTCCATAGCCACTTTTCAAAACCCAGCACCAA
                |  |||     ||    || || | ||| ||  ||  |  ||| |  |  | ||| | || | |    ||| || ||    ||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||  ||    ||||  |||| || || || || || ||||| || ||  
----------------gtgagtactacggccacactgtatccttggtgatt--ttgttttagatcatgcatctcttag-gcaatgtgaacttg----cagTATCTGAGCAATGGGAGGTTCAAGAACGCGGATCACCAGGCGGTGGTGAACTCCGACTGCTGCCGGCTGTCGATCGCGACGTTCCAGAACCCGGCGCCGG

upper sequence: GLYMA02G05450.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G062396_T01 (Zea mays), 3'ss of exon 2
ttatttttatgaagcagcaagtctattggtttgaccgtgtactttgtttttcataatttaaatttgttcatttttttgtggtgggtgcacatgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCAAACCATAGCCGTTTGTCCATAGCCACTTTTCAAAACCCAGCACCAA
 |   | |  |   |  |   |   || ||| |  |||  |     |   |     |  |||| |||    | |       ||   | || |   |||||   |||||||| || ||||||||||| || || ||||| ||||||||||||||  |    |||||  ||||||| ||||| || || ||||| || ||  
gtgagtctccgttccttcgtcttcgtttgttcgttcgttcatgcaatgcat-gcggtgaaaatgtgtgtgatatcc----atgaacgtacgtacgtgcagCTCCTGAGCAACGGCAGGTTCAAGAACGCGGACCACCAGGCGGTGGTGAACTCGGAGTGCAGCCGCCTGTCCATCGCCACGTTCCAGAACCCGGCGCCCG

upper sequence: GLYMA02G05450.2 (Glycine max), 3'ss of exon 2
lower sequence: AT3G51240.1 (Arabidopsis thaliana), 3'ss of exon 2
ttatttttatgaagcagcaagtctattggtttgaccgtgtactttgtttttcataatttaaatttgttcatttttttgtggtgggtgcacatgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCAAACCATAGCCGTTTGTCCATAGCCACTTTTCAAAACCCAGCACCAA
      |||  |  |      | |||||| ||    || | || ||||||   |  |||  | ||| ||| | ||        | |     |  ||| ||| | |||||||||| |||||||||||||||||||| || || ||||||||||| |||   ||| | || ||||||||||| || || ||||| || ||  
-----gttagtactctatccatttattggcttttttgttt-ctctgtttt---tggttttgacttggtcaatctt--------gatttgtcttgatgaagTTTTTGAGCAATGGGAGGTTCAAGAATGCTGATCATCAGGCCGTGGTGAACTCTAACTCGAGCAGATTATCCATAGCCACGTTCCAGAACCCCGCGCCGG

upper sequence: GLYMA02G05450.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0001g14310.t01 (Vitis vinifera), 3'ss of exon 2
-----ttatttttatgaagcagcaagtctattggtttgaccgtgtactttgtttttcataatttaaatttgttcatttttttgtggtgggtgcacatgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCAAACCATAGCCGTTTGTCCATAGCCACTTTTCAAAACCCAGCACCAA
     |  |  || |           ||| |||| ||  || |  |    |      ||||| ||| ||  || | |    ||   | | |  || ||   |||||||||||||||||| |||||||| ||||| || |||||||| |||||||||||  ||   || || ||||| || ||||| || || |||||||| ||| 
gtgagtagtgattctctgcttattcctcttttggattccccatcgaaggggcaga--ataatataa-ttaattaact---ctgcattcgattgacgtgg--gcagTATCTGAGCAATGGGAGGTTCAAAAATGCGGACCACCAAGCTGTGGTGAACTCCGACTGCAGTCGGTTGTCGATTGCCACGTTCCAGAACCCAGCCCCAG

upper sequence: GLYMA02G05450.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0023g03370.t01 (Vitis vinifera), 3'ss of exon 2
ttatttttatgaagcagcaagtctattggtt--tgaccgtgtactttgtttttcataatttaaatttgttcatttttttg--tggtgggtgcacatgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCAAACCATAGCCGTTTGTCCATAGCCACTTTTCAAAACCCAGCACCAA
   | | |    | || | |   || |  ||  |||    ||| |    ||      |    ||   |          ||  |  ||| |    |||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| |  |||||||||| || || |||||||| |||||  
---tatgtggtcaacatccacaatagtccttcctgatatggtattcaaattcatgctacccgaacccgaaagagagagtgattattggtttggtatgg-tgcagTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCCAATCATAGCAGACTGTCCATAGCAACATTCCAAAACCCCGCACCGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193724292|gb|FK657552.1|FK657552
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|193696354|gb|FK639292.1|FK639292
EST:     CTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: CTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|18734213|gb|BM528053.1|BM528053
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|192305185|gb|FG993951.1|FG993951
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|8402839|gb|BE058473.1|BE058473
EST:     CAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: CAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|193684422|gb|FK623546.1|FK623546
EST:     CCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: CCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|193554146|gb|FK514255.1|FK514255
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|208327789|gb|GE124607.1|GE124607
EST:     CGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: CGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|193708685|gb|FK648535.1|FK648535
EST:     TTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|193332441|gb|FK297723.1|FK297723
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|207691229|gb|GD673223.1|GD673223
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|193359057|gb|FK327055.1|FK327055
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|208079293|gb|GD873171.1|GD873171
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|208171805|gb|GD966224.1|GD966224
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|193544470|gb|FK500681.1|FK500681
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTNAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|207702059|gb|GD683933.1|GD683933
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|193526193|gb|FK480676.1|FK480676
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGTGATCATGCTCAT                         TATCTGAGCAATGGAAG
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAG
EST: gi|207763074|gb|GD731205.1|GD731205
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|27425354|gb|CA936874.1|CA936874
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|26058449|gb|CA801363.1|CA801363
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|207775469|gb|GD747292.1|GD747292
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|23725776|gb|BU760853.1|BU760853
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|18734164|gb|BM528024.1|BM528024
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|208187059|gb|GD987217.1|GD987217
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|298166991|gb|HO010430.1|HO010430
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|17021594|gb|BM092628.1|BM092628
EST:     GAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: GAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|5761212|gb|AI966575.1|AI966575
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGCCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGAACACCAAGCGGGGGTG-AC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|207678828|gb|GD660902.1|GD660902
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|10843827|gb|BF067080.1|BF067080
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|193668061|gb|FK610633.1|FK610633
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|208296564|gb|GE094046.1|GE094046
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|7589234|gb|AW705012.1|AW705012
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|31312258|gb|CD397461.1|CD397461
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTTGTCAATCTTGGAGATCATGCTCAT                         NATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|6666582|gb|AW278041.1|AW278041
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|193628988|gb|FK576424.1|FK576424
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|207698944|gb|GD681421.1|GD681421
EST:     TGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|193620929|gb|FK568541.1|FK568541
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|298178691|gb|HO024426.1|HO024426
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|208341325|gb|GE139007.1|GE139007
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|193649237|gb|FK598810.1|FK598810
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAG
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAG
EST: gi|193514061|gb|FK467395.1|FK467395
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|208262589|gb|GE060119.1|GE060119
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAAT
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAAT
EST: gi|10236890|gb|BE805778.1|BE805778
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|9901728|gb|BE610696.1|BE610696
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|193567335|gb|FK526962.1|FK526962
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|298164529|gb|HO014174.1|HO014174
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|207832266|gb|GD803146.1|GD803146
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|193672199|gb|FK617127.1|FK617127
EST:     GTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: GTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|16105791|gb|BI893531.1|BI893531
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|10238784|gb|BE807672.1|BE807672
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|8285712|gb|BE023271.1|BE023271
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|208252102|gb|GE049307.1|GE049307
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
EST: gi|23725617|gb|BU760769.1|BU760769
EST:     TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCAT                         TATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC
genomic: TTCAGCCTGTGGAGGCTGCCTTCGTCGTCAATCTTGGAGATCATGCTCATgtcagtgtgc ... atgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttcataatttaaatttgttcatttttttgtggtgggtgcacatgaatgcagTATCTGAGCAATGGAAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCAAACCATAGCCGTTTGTCCATAGCCACTTTTCAAAACCCAGCACCAA
     tcataatttaaatttg  TA-rich tract