Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaaagttgctttatctttttaacagttttcaggtgtgcatttcattttaaaagactgatatatatttttcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTCATACTCATTTTGCGAAACCGGCTGAAGTATGCTCTGACATACCGTGAAG

Basic information

species Glycine max
transcript GLYMA02G05370.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05370.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 3
------------------gtaag---tgaaagttgctttatcttttta-acagttttcaggtgtgcatttcattttaaaagactgatatat-----atttttcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTCATACTCATTTTGCGAAACCGGCTGAAGTATGCTCTGACATACCGTGAAG
                   |||    ||||   || ||  | ||  ||  | ||||||  ||    || |  || ||      | || | |     ||||||   ||  |||| || ||||| || ||||||||||| ||||||||||||||| ||||  | || ||||||||||||||| ||||||||||||| || |||||||||||||
gtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgt---tatctagttgtagtgtttttatttttctattattttttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTGATCCTCATTTTGCGAAACAGGCTGAAGTATGCACTCACATACCGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12773251|gb|BG238178.1|BG238178
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|192331395|gb|FK019896.1|FK019896
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|298185233|gb|HO030446.1|HO030446
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|192330329|gb|FK019879.1|FK019879
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|298186516|gb|HO037149.1|HO037149
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|6070919|gb|AW100306.1|AW100306
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|13480012|gb|BG509355.1|BG509355
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|16996691|gb|BM086063.1|BM086063
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|254314706|gb|GR829699.1|GR829699
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|24205192|gb|BU964445.1|BU964445
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|14011931|gb|BG726853.1|BG726853
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|207823869|gb|GD794544.1|GD794544
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|9564990|gb|BE474499.1|BE474499
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|298171206|gb|HO016238.1|HO016238
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|207714384|gb|GD696437.1|GD696437
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|298169563|gb|HO020923.1|HO020923
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGTCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|193552807|gb|FK505686.1|FK505686
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|209713029|gb|BW684323.1|BW684323
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|192306160|gb|FG995024.1|FG995024
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|42723142|gb|CK769041.1|CK769041
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|7686422|gb|AW757070.1|AW757070
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|298185840|gb|HO031001.1|HO031001
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|208174091|gb|GD968570.1|GD968570
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAATTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAAATCCAGGGAATGCCTGCCACT
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAA-TCCAGGGAATGCCTGCCACT
EST: gi|24136699|gb|BU927209.1|BU927209
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|209711384|gb|BW665355.1|BW665355
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|24205136|gb|BU964389.1|BU964389
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|298166568|gb|HO010007.1|HO010007
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCTTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|18730191|gb|BM525737.1|BM525737
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|298172842|gb|HO019826.1|HO019826
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|298178096|gb|HO027479.1|HO027479
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|298185836|gb|HO030997.1|HO030997
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|9901739|gb|BE610707.1|BE610707
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|207799867|gb|GD768264.1|GD768264
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|18039968|gb|BM308262.1|BM308262
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|13479334|gb|BG508677.1|BG508677
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|298165950|gb|HO008921.1|HO008921
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|298186477|gb|HO037110.1|HO037110
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|26058865|gb|CA801779.1|CA801779
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|24205206|gb|BU964459.1|BU964459
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|24135604|gb|BU926114.1|BU926114
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|7232947|gb|AW568298.1|AW568298
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|18039341|gb|BM307635.1|BM307635
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|193536651|gb|FK491795.1|FK491795
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|193509200|gb|FK466580.1|FK466580
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|11413001|gb|BF425021.1|BF425021
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|23727082|gb|BU761559.1|BU761559
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|4397559|gb|AI496556.1|AI496556
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|16347113|gb|BI972708.1|BI972708
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|33390170|gb|CA853377.1|CA853377
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|213596261|gb|DB960218.1|DB960218
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|18040328|gb|BM308622.1|BM308622
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|298173423|gb|HO016759.1|HO016759
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|208277481|gb|GE079472.1|GE079472
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|298169333|gb|HO020693.1|HO020693
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGGATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|208223691|gb|GE020904.1|GE020904
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTAATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|15662189|gb|BI699560.1|BI699560
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|298184731|gb|HO029944.1|HO029944
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|6567212|gb|AW234823.1|AW234823
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
EST: gi|213602877|gb|DB972451.1|DB972451
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT                         GCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagtgaaa ... tcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttcaggtgtgcatttcattttaaaagactgatatatatttttcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTCATACTCATTTTGCGAAACCGGCTGAAGTATGCTCTGACATACCGTGAAG
                             gactgat  putative branch site (score: 3)
                                       tatttttcctgttt  putative PPT
               atttcattttaaaaga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgaaagttgctttatctttttaacagttttcaggtgtgcatttcattttaaaagactgatatatatttttcctgtttagGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTCATACTCATTTTGCGAAACCGGCTGAAGTATGCTCTGACATACCGTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG