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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggatgctcattcgttttccctctattttcctttttttgttcttttattttcctataccctccatagactgtaaagtagattgctgataaaatttgtgtttttgagcaaatttagtgttattattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTATTGACAAGAATGGCAAACCTCATAAACTGAGATTGTATTCTATTGCTAG

Basic information

species Glycine max
transcript GLYMA02G05350.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05350.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0023g03510.t01 (Vitis vinifera), 3'ss of exon 2
gtcggatgctcattcgttttccctctattttcctttttttgttcttttattttcctataccctc-cataga-ctgtaaagtagatt-gctgataaaatttg--tgtttttgagc-aaatttagt--gttatt---attgc--agGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTATTGACAAGAATGGCAAACCTCATAAACTGAGATTGTATTCTATTGCTAG
||      ||  | | |  ||| | ||| |   ||      |      |     || ||   |    | || || |  |||   || ||||||      ||  |  ||||||||  |||||  |  || | |    ||||  ||||||  |||| ||||||||||| ||||| |||||||||||| |||||||| ||||||||||||| || ||||| || ||||||||||| || ||||| ||
gtaacgaccttttacatgctccatgtatatatattggaaattcaacagaaccatctttaattttatgtggaacttttgagttttttagctgatcgctcctgatttcttttgagctgaatttgattggtcaattgggttgctcagGAGAAGTTCCCTACAGAGAAGGGCAATCCATTGGGGTAATTGCAGATGGTGTTGACAAGAATGGGAAGCCTCACAAGCTGAGATTGTACTCAATTGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796286|gb|AW781683.1|AW781683
EST:     GAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: GAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213607151|gb|DB965093.1|DB965093
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213603747|gb|DB956284.1|DB956284
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209707451|gb|BW664910.1|BW664910
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213588393|gb|DB967879.1|DB967879
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         CAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209717950|gb|BW666143.1|BW666143
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213607657|gb|DB958676.1|DB958676
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|120533254|gb|EH261387.1|EH261387
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|151401376|gb|EV271190.1|EV271190
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|12688950|gb|BG155286.1|BG155286
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGACG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209727185|gb|BW655223.1|BW655223
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213611912|gb|DB958922.1|DB958922
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|151409217|gb|EV279025.1|EV279025
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213604735|gb|DB956090.1|DB956090
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209709563|gb|BW661890.1|BW661890
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|5509655|gb|AI856213.1|AI856213
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|192317371|gb|FK007493.1|FK007493
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209726964|gb|BW675366.1|BW675366
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213594233|gb|DB966134.1|DB966134
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213597241|gb|DB962487.1|DB962487
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209709774|gb|BW668256.1|BW668256
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209705754|gb|BW661422.1|BW661422
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209714651|gb|BW671573.1|BW671573
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|20812572|gb|BQ297050.1|BQ297050
EST:     TGTGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCCGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213602157|gb|DB962650.1|DB962650
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|9258191|gb|BE346338.1|BE346338
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAATGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213589019|gb|DB973119.1|DB973119
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|15288011|gb|BI471902.1|BI471902
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209717071|gb|BW671378.1|BW671378
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|13562564|gb|BG550784.1|BG550784
EST:     CAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: CAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|192317372|gb|FK007494.1|FK007494
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213618163|gb|DB965320.1|DB965320
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAAAATCA-TTGGG-TAATTCCAGATGG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAA--TCAATTGGGGTAATTCCAGATGG
EST: gi|209714818|gb|BW657360.1|BW657360
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGTGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213595190|gb|DB962329.1|DB962329
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213589650|gb|DB965838.1|DB965838
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|120533554|gb|EH261687.1|EH261687
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtagattgctgataaaatttgtgtttttgagcaaatttagtgttattattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTATTGACAAGAATGGCAAACCTCATAAACTGAGATTGTATTCTATTGCTAG
       tgctgat  putative branch site (score: 3)
                                 aaatttagtgttatta  TA-rich tract