1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aacagtaaatgtgctcttactaacactacacatttgctaactttagaggagtcaaattccctactcatatttacagtaactcattttcaattgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAG
species | Glycine max |
transcript | GLYMA02G04320.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|20497810|gb|BQ272740.1|BQ272740
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|11412198|gb|BF424209.1|BF424209
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|209697330|gb|BW655571.1|BW655571
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|27426578|gb|CA938098.1|CA938098
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|209717041|gb|BW654404.1|BW654404
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|213615316|gb|DB963510.1|DB963510
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|209714239|gb|BW665539.1|BW665539
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|209706985|gb|BW683248.1|BW683248
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|209708293|gb|BW683883.1|BW683883
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|213591634|gb|DB968158.1|DB968158
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|213607636|gb|DB958655.1|DB958655
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|15284749|gb|BI468640.1|BI468640
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|19052738|gb|BM731405.1|BM731405
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|15288232|gb|BI472123.1|BI472123
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|11412830|gb|BF424841.1|BF424841
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|20498718|gb|BQ273648.1|BQ273648
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|120495797|gb|EH223964.1|EH223964
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|105633833|gb|DW247196.1|DW247196
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAGCTTCAGAAAGAGGGCAAAAAG ATTATATTTACTAATGTTGGCAACCCACATGCATTGGGACAGAAACCACTGEST: gi|6134078|gb|AW132407.1|AW132407
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|213591868|gb|DB973419.1|DB973419
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|12773440|gb|BG238367.1|BG238367
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|209723920|gb|BW675240.1|BW675240
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|120531769|gb|EH259902.1|EH259902
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGEST: gi|213587584|gb|DB969725.1|DB969725
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
EST: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAG ATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
genomic: GAGGTGAATTATACCTTCGAGCTTCTGAACTTCAGAAAGAGGGCAAAAAGgtgggttata ... ttgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTG
gaggagtcaaattccctactcatatttacagtaactcattttcaattgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAG
cagtaac putative branch site (score: 2)
attttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacagtaaatgtgctcttactaacactacacatttgctaactttagaggagtcaaattccctactcatatttacagtaactcattttcaattgttggcagATTATCTTTACTAATGTTGGCAACCCGCATGCATTGGGACAGAAACCACTGAGCTTCCCTCGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT