1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ggcatgtctgcgtgacagttctcattattttcccttttccctcattgaactgttctggttggcaattgatttttttttcttattctgtaatatctgcaagAATTCTTCTGCTTCACCATGCCACCAAAGCCTTTAGACTATGGGTCAATAAATGAAAACGTGAAGAAGAGTCAATATGCTGTCAGAGGTGAATTATACCT
species | Glycine max |
transcript | GLYMA02G04320.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAATTCCACAGAAATTTGACTAGGG AATTCTTCTGCTTCACCATGCCACCAAAGCCTTTAGACTATGGGTCAATAAEST: gi|120531769|gb|EH259902.1|EH259902
genomic: CAATTCCACAGAAATTTGACTAGGGgtgaacacag ... tatctgcaagAATTCTTCTGCTTCACCATGCCACCAAAGCCTTTAGACTATGGGTCAATAA
EST: CAATT-C-C---------AC-A--G AATTCTTCTGCTTCACCATGCCACCAAAGCCTTTAGACTATGGGTCAATAAEST: gi|213590180|gb|DB963799.1|DB963799
genomic: CAATTCCACAGAAATTTGACTAGGGgtgaacacag ... tatctgcaagAATTCTTCTGCTTCACCATGCCACCAAAGCCTTTAGACTATGGGTCAATAA
EST: CAATTCCACAGAAATTTGACTAGGG AATTCTTCTGCTTCACCATGCCACCAAAGCCTTTAGACTATGGGTCAATAAEST: gi|213594062|gb|DB961950.1|DB961950
genomic: CAATTCCACAGAAATTTGACTAGGGgtgaacacag ... tatctgcaagAATTCTTCTGCTTCACCATGCCACCAAAGCCTTTAGACTATGGGTCAATAA
EST: CAATTCCACAGAAATTTGACTAGGG AATTCTTCTGCTTCACCATGCCACCAAAGCCTTTAGACTATGGGTCAATAAEST: gi|120495797|gb|EH223964.1|EH223964
genomic: CAATTCCACAGAAATTTGACTAGGGgtgaacacag ... tatctgcaagAATTCTTCTGCTTCACCATGCCACCAAAGCCTTTAGACTATGGGTCAATAA
EST: CAATTCCACAGAAATTTGACTAGGG AATTCTTCTGCTTCACCATGCCACCAAAGCCTTTAGACTATGGGTCAATAA
genomic: CAATTCCACAGAAATTTGACTAGGGgtgaacacag ... tatctgcaagAATTCTTCTGCTTCACCATGCCACCAAAGCCTTTAGACTATGGGTCAATAA
tgaactgttctggttggcaattgatttttttttcttattctgtaatatctgcaagAATTCTTCTGCTTCACCATGCCACCAAAGCCTTTAGACTATGGGTCAATAAATGAAAACGTGAAGAAGAGTCAATATGCTGTCAGAGGTGAATTATACCT
aattgat putative branch site (score: 4)
aattgatttttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcatgtctgcgtgacagttctcattattttcccttttccctcattgaactgttctggttggcaattgatttttttttcttattctgtaatatctgcaagAATTCTTCTGCTTCACCATGCCACCAAAGCCTTTAGACTATGGGTCAATAAATGAAAACGTGAAGAAGAGTCAATATGCTGTCAGAGGTGAATTATACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
-gcatgtc
- - - - tgcgtga
- - - - - - - - - - - - - - -ttccctt
- - - - - - - - - - - - - - - - - - ttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgg