1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ataatcaactccttggaaagtattactaggtgactttccttgtagtgacatttttggtgataacataatgttcttgatgcacttttcatgcctgctgcagCTTAGGGATGGCTCAACTCATCAGGGTACAGTTACATCGATGGAGCCTAATGAAGGCACTTTTATTCTTCACAATGAGAAAACCAGG
species | Glycine max |
transcript | GLYMA02G04110.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGAGTGGAAAAACTGTTATCTTCTATCAG CTTAGGGATGGCTCAACTCATCAGGGTACAGTTACGTCGATGGAGCCTAATEST: gi|298179739|gb|HO024954.1|HO024954
genomic: GGGAGTGGAAAAACTGTTCTCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCAACTCATCAGGGTACAGTTACATCGATGGAGCCTAAT
EST: TTGTTTTGACCGGGCTCAGTGGGAGTGGAAAAACTGTTCTCTTCTATCAG CTTAGGGATGGCTCAACTCATCAGGGTACAGTTACATCGATGGAGCCTAATEST: gi|17963762|gb|BM270507.1|BM270507
genomic: TTGTTTTGACCGGGCTCAGTGGGAGTGGAAAAACTGTTCTCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCAACTCATCAGGGTACAGTTACATCGATGGAGCCTAAT
EST: TTGTTTTGACCGGGCTCAGTGGGAGTGGAAAAACTGTTCTCTTCTATCAG CTTAGGGATGGCTCAACTCATCAGGGTACAGTTACATCGATGGAGCCTAAT
genomic: TTGTTTTGACCGGGCTCAGTGGGAGTGGAAAAACTGTTCTCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCAACTCATCAGGGTACAGTTACATCGATGGAGCCTAAT
tgacatttttggtgataacataatgttcttgatgcacttttcatgcctgctgcagCTTAGGGATGGCTCAACTCATCAGGGTACAGTTACATCGATGGAGCCTAATGAAGGCACTTTTATTCTTCACAATGAGAAAACCAGG
ataacataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatcaactccttggaaagtattactaggtgactttccttgtagtgacatttttggtgataacataatgttcttgatgcacttttcatgcctgctgcagCTTAGGGATGGCTCAACTCATCAGGGTACAGTTACATCGATGGAGCCTAATGAAGGCACTTTTATTCTTCACAATGAGAAAACCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - ctccttg
- - - - - - - - - - - - - - -gtgactt
- - - - - - - - - - - - - - - - - - -ccttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgatg