1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatatgaagagattcatcatacgttgttttaatgtttggatttaagtgaatgccgaccgtctgaatctatttgtgttgtttgtgtttgggagcgaaacagAAGGAAGAAATGGCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAG
species | Glycine max |
transcript | GLYMA02G03990.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGCATTAAAAAAGTGCATGATGCTGTGTTGCACGAGCAAGATTGTCTCG AAGGAAGAAATGGCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCEST: gi|20449478|gb|BQ253602.1|BQ253602
genomic: GAGCATTAAAAAAGTGCATGATGCTGTGTTGCACGAGCAAGATTGTCTCGgtacgttttt ... agcgaaacagAAGGAAGAAATGGCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACC
EST: GAGCATTAAAAAAGTGCATGATGCTGTGTTGCACGAGCAAGATTGTCTCG AAGGAAGAAATGGCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCEST: gi|23064138|gb|BU578911.1|BU578911
genomic: GAGCATTAAAAAAGTGCATGATGCTGTGTTGCACGAGCAAGATTGTCTCGgtacgttttt ... agcgaaacagAAGGAAGAAATGGCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACC
EST: GAGCATTAAAAAAGTGCATGATGCTGTGTTGCACGAGCAAGATTGTCTCG AAGGAAGAAATGGCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGA-CEST: gi|13480785|gb|BG510128.1|BG510128
genomic: GAGCATTAAAAAAGTGCATGATGCTGTGTTGCACGAGCAAGATTGTCTCGgtacgttttt ... agcgaaacagAAGGAAGAAATGGCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACC
EST: GAGCATTAAAAAAGTGCATGATGCTGTGTTGCACGAGCAAGATTGTCTCG AAGGAAGAAATGGCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCEST: gi|192312289|gb|FK005293.1|FK005293
genomic: GAGCATTAAAAAAGTGCATGATGCTGTGTTGCACGAGCAAGATTGTCTCGgtacgttttt ... agcgaaacagAAGGAAGAAATGGCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACC
EST: GAGCATTAAAAAAGTGCATGATGCTGTGTTGCACGAGCAAGATTGTCTCG AAGGAAGAAATGGCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACC
genomic: GAGCATTAAAAAAGTGCATGATGCTGTGTTGCACGAGCAAGATTGTCTCGgtacgttttt ... agcgaaacagAAGGAAGAAATGGCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACC
gtgaatgccgaccgtctgaatctatttgtgttgtttgtgtttgggagcgaaacagAAGGAAGAAATGGCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAG
aatctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatgaagagattcatcatacgttgttttaatgtttggatttaagtgaatgccgaccgtctgaatctatttgtgttgtttgtgtttgggagcgaaacagAAGGAAGAAATGGCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT