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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtttttcagtgttgagtgatgagtgttaacttcaacactgtatagtgcaggattattgtgttagtttggctaacatagtgtgtttatatatatatgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCCTGAAATTAACTCAGGTGATTGTTCTACCCCACCTGCTTATGGGAACTGT

Basic information

species Glycine max
transcript GLYMA02G03740.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03740.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0026g00350.t01 (Vitis vinifera), 3'ss of exon 2
gtaatgtttttcagtgttgagtgatgagtgttaacttcaacactgtatagtgcaggattattgtgttagtttggctaacatagtgtgtttatatatatatgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCCTGAAATTAACTCAGGTGATTGTTCTACCCCACCTGCTTATGGGAACTGT---
                         |  | ||   ||   ||    |||   || |  | |||  |    |||      ||  | |  |  |||||| |||    ||||||||| || ||||| |||||||||||||| |||||||||||| ||||    || || |||||  | || |||     | || | |  ||||| ||||||   
-------------------------gtatatttctttaggcaaaaaataaaccatgcattttgcatcttgttg------atgatctcatactatatacatg---acagGATATTAGTCTGGGAGGATGGTTTCTGCAACTTTGCTGCCTCAACAGC---CGAGATCAACTCCAGCGACTGTGTGGGCTCATCAGTCTATGGCAACTGTGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393888|gb|EV263759.1|EV263759
EST:     TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG                         GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
EST: gi|193528470|gb|FK486772.1|FK486772
EST:     AGGAAACAGAAGGAATTG                         GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCACC
genomic: AGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
EST: gi|192306018|gb|FG993636.1|FG993636
EST:     TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG                         GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
EST: gi|9564215|gb|BE473724.1|BE473724
EST:     TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG                         GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
EST: gi|209709438|gb|BW668366.1|BW668366
EST:     TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG                         GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCACC
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
EST: gi|151396617|gb|EV266494.1|EV266494
EST:     TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG                         GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggattattgtgttagtttggctaacatagtgtgtttatatatatatgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCCTGAAATTAACTCAGGTGATTGTTCTACCCCACCTGCTTATGGGAACTGT
                   ggctaac  putative branch site (score: 2)
                          atagtgtgtttatata  TA-rich tract