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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttcccttttctttatttgttgttttctgttctgttttaatcttttttttttaatgtgaagtagcaactacagaaaggtaatattctcactaaattatcagGTAAAGCGGCATGGGGTTTCTGTGTTTCTCATGCCATCGGGGATGCTGGGAACGCTCCTTTCTCTGGTTGATGTTTTGCCTCTATTCTCGAACACTGCAT

Basic information

species Glycine max
transcript GLYMA02G03160.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03160.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0026g00920.t01 (Vitis vinifera), 3'ss of exon 2
gtattttcccttttctttatttgttgttttctgttctgttttaatcttttttttttaatgtgaagtagcaactacagaaaggtaatattctcactaa--att-atcagGTAAAGCGGCATGGGGTTTCTGTGTTTCTCATGCCATCGGGGATGCTGGGAACGCTCCTTTCTCTGGTTGATGTTTTGCCTCTATTCTCGAACACTGCAT
          | | ||| | || ||||||  |||| |||||    |||| ||||       ||     | |  | | ||  || | | ||||||| |  ||| | |||||||||| ||||||  | ||||| |||||||||||||| ||||||||||| ||  | |||||| |  | || || || |||||||| || ||||| || |
---------gtatgcttgagttattgttt--tgttttgtttgggcctttctttt-------gacaactccatcatataagagtgaaactctcactgaccattgagcagGTAAAGCAGCATGGCATCTCTGTATTTCTCATGCCATCAGGGATGCTGGGGACCTTGCTTTCTTTAATAGACGTCTTACCTCTATTTTCTAACACGGCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847300|gb|BF070005.1|BF070005
EST:     AACATACTTTGAAGTTTGATTCATGGGAAGATCCTGCAGAGTTGGAATAT                         GTAAAGCGGCATGGGGTTTCTGTGTTTCTCATGCCATCGGGGATGCTGGGA
genomic: AACATACTTTGAAGTTTGATTCATGGGAAGATCCTGCAGAGTTGGAATATgtattttccc ... aaattatcagGTAAAGCGGCATGGGGTTTCTGTGTTTCTCATGCCATCGGGGATGCTGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttaatgtgaagtagcaactacagaaaggtaatattctcactaaattatcagGTAAAGCGGCATGGGGTTTCTGTGTTTCTCATGCCATCGGGGATGCTGGGAACGCTCCTTTCTCTGGTTGATGTTTTGCCTCTATTCTCGAACACTGCAT
                                         cactaaa  putative branch site (score: 2)
                                          actaaattat  TA-rich tract