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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttattggaaatgtctagttttgttattactttaccgcaagctttatgcttttttgcagacccttaatttgttgtttgtatgattttgagtttccatgcagAACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTGACGCCTTCTTGAAATTGACAG

Basic information

species Glycine max
transcript GLYMA02G02600.5
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193549059|gb|FK505410.1|FK505410
EST:     AGCACATCCTTGATTATTTCTCTTGGTAGTATCAAACAAAGCTTTGTATT                         AACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTGACGCCTT
genomic: AGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttatt ... ttccatgcagAACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTGACGCCTT
EST: gi|207748852|gb|GD719485.1|GD719485
EST:     AGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATT                         AACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTG
genomic: AGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttatt ... ttccatgcagAACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTG
EST: gi|15204535|gb|BI427303.1|BI427303
EST:     AGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATT                         AATTAATCCGCATTTACCAGACATGCCTATTGTTTAT
genomic: AGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttatt ... ttccatgcagAACTAATCCGCATTTACCAGACATGCCTATTGTTTAT
EST: gi|208098763|gb|GD891418.1|GD891418
EST:     AGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATT                         AACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTGACGCCTT
genomic: AGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttatt ... ttccatgcagAACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTGACGCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttttttgcagacccttaatttgttgtttgtatgattttgagtttccatgcagAACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTGACGCCTTCTTGAAATTGACAG
               ccttaat  putative branch site (score: 4)
                                            tttccat  putative PPT
                 ttaatttgttgttt  TA-rich tract