1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgttagtataccgaagaattttctttccttaagggtttgttcccttttgtggtctaattttgctttttttgttgtttttctagACCGGATGACACCCCCTGGGATGGAG
species | Glycine max |
transcript | GLYMA02G02400.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGG ACCGGATGACACCCCCTGGGATGGAGEST: gi|15337304|gb|BI497960.1|BI497960
genomic: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagt ... gtttttctagACCGGATGACACCCCCTGGGATGGAG
EST: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGG ACCGGATGACACCCCCTGGGATGGAGEST: gi|192329123|gb|FK019738.1|FK019738
genomic: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagt ... gtttttctagACCGGATGACACCCCCTGGGATGGAG
EST: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGG ACCGGATGACACCCCCTGGGATGGAGEST: gi|192330836|gb|FK021609.1|FK021609
genomic: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagt ... gtttttctagACCGGATGACACCCCCTGGGATGGAG
EST: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGG ACCGGATGACACCCCCTGGGATGGAGEST: gi|298164392|gb|HO014037.1|HO014037
genomic: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagt ... gtttttctagACCGGATGACACCCCCTGGGATGGAG
EST: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGG ACCGGATGACACCCCCTGGGATGGAGEST: gi|298180824|gb|HO022263.1|HO022263
genomic: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagt ... gtttttctagACCGGATGACACCCCCTGGGATGGAG
EST: GGTGCTCCTCATGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGG ACCGGATGACACCCCCTGGGATGGAGEST: gi|11413307|gb|BF425318.1|BF425318
genomic: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagt ... gtttttctagACCGGATGACACCCCCTGGGATGGAG
EST: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGG ACCGGATGACACCCCCTGGGATGGAGEST: gi|298178672|gb|HO024407.1|HO024407
genomic: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagt ... gtttttctagACCGGATGACACCCCCTGGGATGGAG
EST: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGG ACCGGATGACACCCCCTGGGATGGAGEST: gi|151394718|gb|EV264589.1|EV264589
genomic: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagt ... gtttttctagACCGGATGACACCCCCTGGGATGGAG
EST: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGG ACCGGATGACACCCCCTGGGATGGAGEST: gi|298179938|gb|HO025153.1|HO025153
genomic: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagt ... gtttttctagACCGGATGACACCCCCTGGGATGGAG
EST: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGG ACCGGATGACACCCCCTGGGATGGAGEST: gi|151405335|gb|EV275149.1|EV275149
genomic: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagt ... gtttttctagACCGGATGACACCCCCTGGGATGGAG
EST: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGG ACCGGATGACACCCCCTGGGATGGAGEST: gi|254334254|gb|GR849172.1|GR849172
genomic: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagt ... gtttttctagACCGGATGACACCCCCTGGGATGGAG
EST: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGG ACCGGATGACACCCCCTGGGATGGAGEST: gi|298175146|gb|HO014949.1|HO014949
genomic: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagt ... gtttttctagACCGGATGACACCCCCTGGGATGGAG
EST: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGG ACCGGATGACACCCCCTGGGATGGAGEST: gi|5509647|gb|AI856205.1|AI856205
genomic: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagt ... gtttttctagACCGGATGACACCCCCTGGGATGGAG
EST: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGG ACCGGATGACACCCCCTGGGATGGAG
genomic: GGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagt ... gtttttctagACCGGATGACACCCCCTGGGATGGAG
ttaagggtttgttcccttttgtggtctaattttgctttttttgttgtttttctagACCGGATGACACCCCCTGGGATGGAG
gtctaat putative branch site (score: 3)
ttttgctttttttgtt CT-rich tract
taattttgcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttagtataccgaagaattttctttccttaagggtttgttcccttttgtggtctaattttgctttttttgttgtttttctagACCGGATGACACCCCCTGGGATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA