Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattttattttgttatttgtttatcttgtagcttagtcttgtttattgacttggatagtgttcttgaagGAGTGATTTGCAAGTCCCATCTTCCCCTTATTTCCCTACCTATGCACAAGGGCAAGGGCCACCCCCCATGGTTGCCGAGCGTTTCCAGAGTGTTATAAGT

Basic information

species Glycine max
transcript GLYMA02G01510.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193621206|gb|FK570904.1|FK570904
EST:     GGGTATTTGGTCTATAAG                         GAGTGATTTGC-AGTCCCATCTTCCCCTTATTTCCCTACCTATGCACAAGG
genomic: GGGTATTTGGTCTATAAGgtagatttta ... gttcttgaagGAGTGATTTGCAAGTCCCATCTTCCCCTTATTTCCCTACCTATGCACAAGG
EST: gi|193635332|gb|FK582517.1|FK582517
EST:     GGGTATTTGGTCTATAAG                         GAGTGATTTGCAAGTCCCATCTTCCCCTTATTTCCCTACCTATGCACAAGG
genomic: GGGTATTTGGTCTATAAGgtagatttta ... gttcttgaagGAGTGATTTGCAAGTCCCATCTTCCCCTTATTTCCCTACCTATGCACAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgtttatcttgtagcttagtcttgtttattgacttggatagtgttcttgaagGAGTGATTTGCAAGTCCCATCTTCCCCTTATTTCCCTACCTATGCACAAGGGCAAGGGCCACCCCCCATGGTTGCCGAGCGTTTCCAGAGTGTTATAAGT
                             tattgac  putative branch site (score: 2)
                                            tgttctt  putative PPT
                        ttgtttatt  TA-rich tract