1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaagttaaaatgtctattttatcttggtctgtttgcctttcactttgcatcacgccttcacccatttgagcaacttcctgataaatatgtagtatacttatgtagtaacctgttaaaacaaaatgcagGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAG
species | Glycine max |
transcript | GLYMA02G01220.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGGTTGCCTGATGAGATGAATAGGACAATGAAAATTAGGGATGAAAGG GAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATAEST: gi|120532325|gb|EH260458.1|EH260458
genomic: AAAGGTTGCCTGATGAGATGAAT-GG-C-ATGAAAATTAGGGATGAAAGGgtaaagttaa ... caaaatgcagGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATA
EST: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGG GAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATAEST: gi|193488973|gb|FK456670.1|FK456670
genomic: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGGgtaaagttaa ... caaaatgcagGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATA
EST: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGG GAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATAEST: gi|193329498|gb|FK296064.1|FK296064
genomic: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGGgtaaagttaa ... caaaatgcagGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATA
EST: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGG GAAATGGAAGCAACTAGTGGTAGATGGAAATGGGACTGAAACAGGACATATEST: gi|193586534|gb|FK538560.1|FK538560
genomic: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGGgtaaagttaa ... caaaatgcagGAAATGGAAGCAACT-GTGGTAGATGGAAATGGGACTGAAACAGGACATAT
EST: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGG GAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACGTATAEST: gi|208229998|gb|GE023381.1|GE023381
genomic: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGGgtaaagttaa ... caaaatgcagGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATA
EST: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGG GAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGAEST: gi|193632426|gb|FK583774.1|FK583774
genomic: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGGgtaaagttaa ... caaaatgcagGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGA
EST: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGG GAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATAEST: gi|193577033|gb|FK535206.1|FK535206
genomic: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGGgtaaagttaa ... caaaatgcagGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATA
EST: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGG GAAATGGAAGCAACTGTEST: gi|193356257|gb|FK321430.1|FK321430
genomic: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGGgtaaagttaa ... caaaatgcagGAAATGGAAGCAACTGT
EST: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGG GAA-TGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATAEST: gi|207797139|gb|GD771147.1|GD771147
genomic: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGGgtaaagttaa ... caaaatgcagGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATA
EST: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGG GAAATGGAAGCAAACTAGTGGTAGATGGAAATGGGA
genomic: TTGAAAGGTTGCCTGATGAGATGAATGGCATGAAAATTAGGGATGAAAGGgtaaagttaa ... caaaatgcagGAAATGGAAGCAA-CT-GTGGTAGATGGAAATGGGA
cttcctgataaatatgtagtatacttatgtagtaacctgttaaaacaaaatgcagGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAG
tagtaac putative branch site (score: 1)
ataaatatgtagtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagttaaaatgtctattttatcttggtctgtttgcctttcactttgcatcacgccttcacccatttgagcaacttcctgataaatatgtagtatacttatgtagtaacctgttaaaacaaaatgcagGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG