1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tatatgaattaagtaataagtaggattgtgctttttctctctacatttaatgttattgtgttatatgcctgttgagataaggataatttcttggctacagGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAG
species | Glycine max |
transcript | GLYMA02G00750.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAAT GCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAGEST: gi|22541847|gb|BU091690.1|BU091690
genomic: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAATgtaaacactt ... ttggctacagGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAG
EST: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAAT GCTTCCTGTAATGAAAGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAGEST: gi|19347696|gb|BM892484.1|BM892484
genomic: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAATgtaaacactt ... ttggctacagGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAG
EST: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAAT GCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAGEST: gi|6566941|gb|AW234572.1|AW234572
genomic: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAATgtaaacactt ... ttggctacagGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAG
EST: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAAT GCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAGEST: gi|193410737|gb|FK375898.1|FK375898
genomic: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAATgtaaacactt ... ttggctacagGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAG
EST: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAAT GCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAGEST: gi|254328397|gb|GR835362.1|GR835362
genomic: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAATgtaaacactt ... ttggctacagGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAG
EST: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAAT GCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAGEST: gi|4291000|gb|AI437557.1|AI437557
genomic: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAATgtaaacactt ... ttggctacagGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAG
EST: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAAT GCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATNTATTCTACAGEST: gi|208218769|gb|GE017081.1|GE017081
genomic: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAATgtaaacactt ... ttggctacagGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAG
EST: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAAT GCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAGEST: gi|192301309|gb|FG989014.1|FG989014
genomic: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAATgtaaacactt ... ttggctacagGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAG
EST: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAAT GCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAG
genomic: ATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCTTTATTGTAAATgtaaacactt ... ttggctacagGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAG
tttaatgttattgtgttatatgcctgttgagataaggataatttcttggctacagGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAG
atttaat putative branch site (score: 4)
tttctt putative PPT
ttattgtgttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatgaattaagtaataagtaggattgtgctttttctctctacatttaatgttattgtgttatatgcctgttgagataaggataatttcttggctacagGCTTCCTGTAATGAAGGGTCAGAAAAAGTTGAGAGGGCATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAG
- - - - - - - - - - - -gattgtg
- - - - - - - - - - - - - - - - - - - ctctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcct