Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taataattgcttctagtgattcggtgtatatgcaatataaattgccgagattagtgctggcttatatagatggtgatgcgatggctattttacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGATCTCCAAGGAGATGAAGACCATGCCTTCAAGAAGATTCGTTTGAGAGCTG

Basic information

species Glycine max
transcript GLYMA01G44700.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G44700.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os03g10340.1 (Oryza sativa), 3'ss of exon 2
taataattgcttctagtgattc-ggtgtatatgcaatataaattgccgagattagtgctggcttatatagatggtgatgcgatggctattttacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGATCTCCAAGGAGATGAAGACCATGCCTTCAAGAAGATTCGTTTGAGAGCTG
   |   || |  |  || ||  ||| | |   |     ||  ||  |   | |    |         |  || |||| |      | | || | |   ||||||||||||| || || || |||||||||||||||||||| || |||||||||||    ||||| || || || | || ||||||  |  |  | ||||
-tttgtctgttcatcatgctttaggtctgtcaacctctaaacctgtagctgtcataatttatgatgtcatctgctgattctcaatatttctttcgttttagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGATCTCCAGAACGATGAGGATCAGGCGTACAGGAAGATCAGACTTCGTGCTG

upper sequence: GLYMA01G44700.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0020g03900.t01 (Vitis vinifera), 3'ss of exon 3
taataattgcttctagtgattcggtgtatatgcaatata-aattgccgagattagtgctggcttatatagatggtgatgcgatggctattttacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGATCTCCAAGGAGATGAAGACCATGCCTTCAAGAAGATTCGTTTGAGAGCTG
 | ||| |    |     ||  | ||   ||   |||||   || |    ||    | |   | | ||  ||     |    |     | |    |||||||| ||||||||||| ||||||||| | ||||||||| | ||| | ||||| || || |  ||||| || || || |  |  ||||||||  |||||||||
cattaactaaggcccaacata-gctgacaattacatatatggttacaagcatgcaggattattcacatgcatacatttaatctaaacttgtcctctaacagATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGACCTTCAGGCTGATGAGGATCAGGCTTATAGAAAGATTCGACTGAGAGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208047203|gb|GD845644.1|GD845644
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|19453512|gb|BM954922.1|BM954922
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|254343531|gb|GR857287.1|GR857287
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|38193400|gb|CF922606.1|CF922606
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|298168184|gb|HO013447.1|HO013447
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|193637907|gb|FK585751.1|FK585751
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGT
EST: gi|4397560|gb|AI496557.1|AI496557
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|5058165|gb|AI736641.1|AI736641
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAAACATAGAGTGTTTGAGGTCTTATTTGGCTG
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAA-CATAGAGTGTTTGAGGTCTCATT-GGCTG
EST: gi|7232533|gb|AW567888.1|AW567888
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|16348775|gb|BI974370.1|BI974370
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|17153761|gb|BM143694.1|BM143694
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|26060090|gb|CA803004.1|CA803004
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|7233017|gb|AW568368.1|AW568368
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|192332525|gb|FK025630.1|FK025630
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|192328074|gb|FK020377.1|FK020377
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|26058427|gb|CA801341.1|CA801341
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|192332152|gb|FK024598.1|FK024598
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|208229042|gb|GE026912.1|GE026912
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|17400321|gb|BM177103.1|BM177103
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGNNNNNNNG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|7685628|gb|AW756276.1|AW756276
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|12690078|gb|BG156414.1|BG156414
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|19269893|gb|BM886149.1|BM886149
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|14126294|gb|BG790732.1|BG790732
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|10847434|gb|BF070121.1|BF070121
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|6502115|gb|AW203488.1|AW203488
EST:     GGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGA
genomic: GGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAA-CCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGA
EST: gi|254337475|gb|GR845152.1|GR845152
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|151393784|gb|EV263659.1|EV263659
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|213599881|gb|DB973911.1|DB973911
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|7588555|gb|AW704278.1|AW704278
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|213616552|gb|DB967188.1|DB967188
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|8669050|gb|BE190152.1|BE190152
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|5058376|gb|AI736852.1|AI736852
EST:     GGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCCAGG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGA
genomic: GGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAA-CCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGA
EST: gi|31561066|gb|CD486904.1|CD486904
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|213611635|gb|DB969023.1|DB969023
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|298181845|gb|HO026020.1|HO026020
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|298182970|gb|HO028233.1|HO028233
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|38192220|gb|CF921426.1|CF921426
EST:     AGGTCAAGAATATTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCCTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|13252116|gb|BG363019.1|BG363019
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|19935243|gb|BQ080273.1|BQ080273
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|9901452|gb|BE610420.1|BE610420
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|213595543|gb|DB968507.1|DB968507
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|193472352|gb|FK438601.1|FK438601
EST:     TACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: TACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|17153668|gb|BM143601.1|BM143601
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|192318967|gb|FK010587.1|FK010587
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|192295006|gb|FG986725.1|FG986725
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ACTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|6913653|gb|AW395183.1|AW395183
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|24136812|gb|BU927322.1|BU927322
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|37995820|gb|CF807409.1|CF807409
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
EST: gi|192325439|gb|FK017195.1|FK017195
EST:     AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT
genomic: AGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGgttttttatt ... tacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgagattagtgctggcttatatagatggtgatgcgatggctattttacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGATCTCCAAGGAGATGAAGACCATGCCTTCAAGAAGATTCGTTTGAGAGCTG
                                       ctatttt  CT-rich tract
                                        tattttacataaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taataattgcttctagtgattcggtgtatatgcaatataaattgccgagattagtgctggcttatatagatggtgatgcgatggctattttacataacagATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGATCTCCAAGGAGATGAAGACCATGCCTTCAAGAAGATTCGTTTGAGAGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT