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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctaacttgcaattgcactttgcaaacacccacgcagattatatatatggactatagtatctaacattgtttctcaatcttttcaattatatgcagATTGTTGCTTTTCTCTGTGGTG

Basic information

species Glycine max
transcript GLYMA01G43010.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295809|gb|FG992620.1|FG992620
EST:     CAATCTCTGGCACTCTGATCTTTTGAGTACAATTCAAGCTGACACCCCTT                         ATTGTTGCTTTTCTCTGTGGCG
genomic: CAATCTCTGGCACTCTGATCTTTTGAGTACAATTCAAGCTGACACCCCTTgtaagttcta ... ttatatgcagATTGTTGCTTTTCTCTGTGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatatggactatagtatctaacattgtttctcaatcttttcaattatatgcagATTGTTGCTTTTCTCTGTGGTG
                 atctaac  putative branch site (score: 2)
                                  aatcttttcaattata  TA-rich tract