1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtctctacttacctatatatttacacttggaatgtttttttttttttttttgtgtgtgtggacaatgtaataacttggtgtttgtgtgataaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCTACCATTCCTATCACAGGAACTGGCATTAACCCAGCTAGGAGTCTTGGTG
species | Glycine max |
transcript | GLYMA01G42950.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCG ATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCTEST: gi|193443247|gb|FK405255.1|FK405255
genomic: ATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGgtacccattc ... aaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCT
EST: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTGGAGACTCTCACGTTCCG ATTTTGGCCCCTCT-CCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCTEST: gi|192297908|gb|FG988364.1|FG988364
genomic: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGgtacccattc ... aaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCT
EST: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCG ATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTEST: gi|192295284|gb|FG985938.1|FG985938
genomic: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGgtacccattc ... aaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTT
EST: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCG ATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCTEST: gi|4313282|gb|AI460401.1|AI460401
genomic: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGgtacccattc ... aaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCT
EST: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCG ATTNTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTG-TCCACTTG-CTEST: gi|151394697|gb|EV264568.1|EV264568
genomic: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGgtacccattc ... aaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCT
EST: TCTTCTCCGCCACTGATGCCAAGAGAGACGCTAGAGACTCTCACGTTCCG ATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCTEST: gi|193424732|gb|FK388131.1|FK388131
genomic: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGgtacccattc ... aaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCT
EST: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCG ATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCTEST: gi|192312379|gb|FK003171.1|FK003171
genomic: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGgtacccattc ... aaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCT
EST: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCG ATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTT-GGTCEST: gi|192312380|gb|FK003172.1|FK003172
genomic: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGgtacccattc ... aaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTC
EST: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCG ATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGEST: gi|193571986|gb|FK532349.1|FK532349
genomic: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGgtacccattc ... aaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTG
EST: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTGGAGACTCTCACGTTCCG ATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCTEST: gi|31474331|gb|CD416359.1|CD416359
genomic: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGgtacccattc ... aaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCT
EST: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTCCCG ATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCTEST: gi|208110953|gb|GD910967.1|GD910967
genomic: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGgtacccattc ... aaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCT
EST: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCG ATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCTEST: gi|151403754|gb|EV273564.1|EV273564
genomic: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGgtacccattc ... aaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCT
EST: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCG ATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCT
genomic: TCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGgtacccattc ... aaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCT
ttttttgtgtgtgtggacaatgtaataacttggtgtttgtgtgataaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCTACCATTCCTATCACAGGAACTGGCATTAACCCAGCTAGGAGTCTTGGTG
taataac putative branch site (score: 1)
ataaaattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctacttacctatatatttacacttggaatgtttttttttttttttttgtgtgtgtggacaatgtaataacttggtgtttgtgtgataaaattgtagATTTTGGCCCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTCCACTTGGCTACCATTCCTATCACAGGAACTGGCATTAACCCAGCTAGGAGTCTTGGTG
- - - - - - - - - - - - - - ggaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtga