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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctttcttcatgtgtgacatgttgtattgtactttactttggtcactagtgtagcaaagtactaacatgttagtagttcaactgtgttgtgtaaactgtcagATTGTGGGAGATGTCATCATGGTGGATCGAGGCAACTGCACGTTCACAAAAAAGGCAAATATTGCACAGAATGCTAATGCTTCAGCCATCCTCATCATAA

Basic information

species Glycine max
transcript GLYMA01G42940.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699604|gb|BW655710.1|BW655710
EST:     GCCTTATTCTTTCAGATCCTCGTGATTGTTGCATTCCGCCAAAGAATAAG                         ATTGTGGGAGATGTCATCATGGTGGATCGAGGCAACTGCACGTTCACAAAA
genomic: GCCTTATTCTTTCAGATCCTCGTGATTGTTGCATTCCGCCAAAGAATAAGgttctttctt ... aaactgtcagATTGTGGGAGATGTCATCATGGTGGATCGAGGCAACTGCACGTTCACAAAA
EST: gi|193495316|gb|FK459338.1|FK459338
EST:     GCCTTATTCTTTCAGATCCTCGTGATTGTTGCATTCCGCCAAAGAATAAG                         ATTGTGGGAGATGTCATCATGGTGGATCGAGGCAACTGCACGTTCACAAAA
genomic: GCCTTATTCTTTCAGATCCTCGTGATTGTTGCATTCCGCCAAAGAATAAGgttctttctt ... aaactgtcagATTGTGGGAGATGTCATCATGGTGGATCGAGGCAACTGCACGTTCACAAAA
EST: gi|209729790|gb|BW658595.1|BW658595
EST:     GCCTTATTCTTTCAGATCCTCGTGATTGTTGCATTCCGCCAAAGAATAAG                         ATTGTGGGAGATGTCATCATGGTGGATCGAGGCAACTGCACGTTCACAAAA
genomic: GCCTTATTCTTTCAGATCCTCGTGATTGTTGCATTCCGCCAAAGAATAAGgttctttctt ... aaactgtcagATTGTGGGAGATGTCATCATGGTGGATCGAGGCAACTGCACGTTCACAAAA
EST: gi|213614822|gb|DB956958.1|DB956958
EST:     GCCTTATTCTTTCAGATCCTCGTGATTGTTGCATTCCGCCAAAGAATAAG                         ATTGTGGGAGATGTCATCATGGTGGATCGAGGCAACTGCACGTTCACAAAA
genomic: GCCTTATTCTTTCAGATCCTCGTGATTGTTGCATTCCGCCAAAGAATAAGgttctttctt ... aaactgtcagATTGTGGGAGATGTCATCATGGTGGATCGAGGCAACTGCACGTTCACAAAA
EST: gi|298165710|gb|HO008681.1|HO008681
EST:     ATTCCGCCAAAGAATAAG                         ATTGTGGGAGATGTCATCATGGTGGATCGAGGCAACTGCACGTTCACAAAA
genomic: ATTCCGCCAAAGAATAAGgttctttctt ... aaactgtcagATTGTGGGAGATGTCATCATGGTGGATCGAGGCAACTGCACGTTCACAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgtagcaaagtactaacatgttagtagttcaactgtgttgtgtaaactgtcagATTGTGGGAGATGTCATCATGGTGGATCGAGGCAACTGCACGTTCACAAAAAAGGCAAATATTGCACAGAATGCTAATGCTTCAGCCATCCTCATCATAA
            tactaac  putative branch site (score: 0)