1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagttttctgttcttcttggtatactttgcatttgtgttcagatcttttttttttttttttcctatggacgcatttagttgtctattacattaatattaattgttctctattattcttacagAACAGGAAGCTTATAAGCTCAGATCCTTTGTGGATCAACCTGCTTTTACGGATCTTCATTGG
species | Glycine max |
transcript | GLYMA01G41600.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGAAAAGCAGCTTATGCATGGAAAAGGATCAACGAGCTCCGTCTTAATG AACAGGAAGCTTATAAGCTCAGATCCTTTGTGGATCAACCTGCTTTTACGGEST: gi|209699794|gb|BW652487.1|BW652487
genomic: GAGAAAAGCAGCTTATGCATGGAAAAGGATCAACGAGCTCCGTCTTAATGgtgagttttc ... attcttacagAACAGGAAGCTTATAAGCTCAGATCCTTTGTGGATCAACCTGCTTTTACGG
EST: GAGAAAAGCAGCTTATGCATGGAAAAGGATCAACGAGCTCCGTCTTAATG AACAGGAAGCTTATAAGCTCAGATCCTTTGTGGATCAACCTGCTTTTACGGEST: gi|193553645|gb|FK508602.1|FK508602
genomic: GAGAAAAGCAGCTTATGCATGGAAAAGGATCAACGAGCTCCGTCTTAATGgtgagttttc ... attcttacagAACAGGAAGCTTATAAGCTCAGATCCTTTGTGGATCAACCTGCTTTTACGG
EST: GAGAAAAGCAGCTTATGCATGGAAAAGGATCAACGAGCTCCGTCTTAATG AACAGGAAGCTTATAAGCTCAGATCCTTTGTGGATCAACCTGCTTTTACGGEST: gi|21675921|gb|BQ628272.1|BQ628272
genomic: GAGAAAAGCAGCTTATGCATGGAAAAGGATCAACGAGCTCCGTCTTAATGgtgagttttc ... attcttacagAACAGGAAGCTTATAAGCTCAGATCCTTTGTGGATCAACCTGCTTTTACGG
EST: GAGAAAAGCAGCTTATGCATGGAAAAGGATCAACGAGCTCCGTCTTAATG AACAGGAAGCTTATAAGCTCAGATCCTTTGTGGATCAACCTGCTTTTACGG
genomic: GAGAAAAGCAGCTTATGCATGGAAAAGGATCAACGAGCTCCGTCTTAATGgtgagttttc ... attcttacagAACAGGAAGCTTATAAGCTCAGATCCTTTGTGGATCAACCTGCTTTTACGG
gacgcatttagttgtctattacattaatattaattgttctctattattcttacagAACAGGAAGCTTATAAGCTCAGATCCTTTGTGGATCAACCTGCTTTTACGGATCTTCATTGG
tattaat putative branch site (score: 2)
ttctctattattctt putative PPT
tattacattaatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttctgttcttcttggtatactttgcatttgtgttcagatcttttttttttttttttcctatggacgcatttagttgtctattacattaatattaattgttctctattattcttacagAACAGGAAGCTTATAAGCTCAGATCCTTTGTGGATCAACCTGCTTTTACGGATCTTCATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA