1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtctgtattgcattttctgttcttgatttataagtgcataaatagatgacaacttattggtaataataccactgtttatttacatctgtcatctgtgttgtgtcagGCATGTGCCTTGTATAATAACTGGTGGCCGATGCTGAGTG
species | Glycine max |
transcript | GLYMA01G40930.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGCCTCCTTGGCAATTTTGGTGTCTGGAGGAATTGTCTTGCAAATTTTG GCATGTGCCTTGTATAATAACTGGTGGCCGATGCTGAGTGEST: gi|151402601|gb|EV272414.1|EV272414
genomic: TTGCCTCCTTGGCAATTTTGGTGTCTGGAGGAATTGTCTTGCAAATTTTGgtctgtattg ... gttgtgtcagGCATGTGCCTTGTATAATAACTGGTGGCCGATGCTGAGTG
EST: TTGCCTCCTTGGCAATTTTGGTGTCTGGAGGAATTGTCTTGCAAATTTTG GCATGTGCCTTGTATAATAACTGGTGGCCGATGCTGAGTGEST: gi|192300500|gb|FG988857.1|FG988857
genomic: TTGCCTCCTTGGCAATTTTGGTGTCTGGAGGAATTGTCTTGCAAATTTTGgtctgtattg ... gttgtgtcagGCATGTGCCTTGTATAATAACTGGTGGCCGATGCTGAGTG
EST: TTGCCTCCTTGGCAATTTTGGTGTCTGGAGGAATTGTCTTGCAAATTTTG GCATGTGCCTTGTATAATAACTGGTGGCCGATGCTGAGTGEST: gi|208051148|gb|GD845111.1|GD845111
genomic: TTGCCTCCTTGGCAATTTTGGTGTCTGGAGGAATTGTCTTGCAAATTTTGgtctgtattg ... gttgtgtcagGCATGTGCCTTGTATAATAACTGGTGGCCGATGCTGAGTG
EST: TTGCCTCCTTGGCAATTTTGGTGTCTGGAGGAATTGTCTTGCAAATTTTG GCATGTGCCTTGTATAATAACTGGTGGCCGATGCTGAGTGEST: gi|193662825|gb|FK604033.1|FK604033
genomic: TTGCCTCCTTGGCAATTTTGGTGTCTGGAGGAATTGTCTTGCAAATTTTGgtctgtattg ... gttgtgtcagGCATGTGCCTTGTATAATAACTGGTGGCCGATGCTGAGTG
EST: TTGCCTCCTTGGCAATTTTGGTGTCTGGAGGAATCGTCTTGCAAATTTTG GCATGTGCCTTGTATAATAACTGGTGGCCGATGCTGAGTG
genomic: TTGCCTCCTTGGCAATTTTGGTGTCTGGAGGAATTGTCTTGCAAATTTTGgtctgtattg ... gttgtgtcagGCATGTGCCTTGTATAATAACTGGTGGCCGATGCTGAGTG
acttattggtaataataccactgtttatttacatctgtcatctgtgttgtgtcagGCATGTGCCTTGTATAATAACTGGTGGCCGATGCTGAGTG
tttatttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtattgcattttctgttcttgatttataagtgcataaatagatgacaacttattggtaataataccactgtttatttacatctgtcatctgtgttgtgtcagGCATGTGCCTTGTATAATAACTGGTGGCCGATGCTGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG