1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtttcttcagaattatttaaatagcttatatatatgagtcaatatgcttacttgtgatcacatccagGCGTGCAACTAAGCGATTACAAACTGCCAGAGGAAGTTAAAGATGCAGGTTTTCAAATCTGCGGCGATGAATTAGGGTCTATTGTTGAAGTCCATGATGT
species | Glycine max |
transcript | GLYMA01G40130.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTGAGGATTGCAATTTTGGTTTCCAAAGCAGCACTTCAATTTATCCAAA GCGTGCAACTAAGCGATTACAAACTGCCAGAGGAAGTTAAAGATGCAGGTTEST: gi|213618425|gb|DB969395.1|DB969395
genomic: GTTGAGGATTGCAATTTTGGTTTCCAAAGCAGCACTTCAATTTATCCAAAgtaagtttct ... tcacatccagGCGTGCAACTAAGCGATTACAAACTGCCAGAGGAAGTTAAAGATGCAGGTT
EST: GTTGAGGATTGCAATTTTGGTTTCCAAAGCAGCACTTCAATTTATCCAAA GCGTGCAACTAAGCGATTACAAACTGCCAGAGGAAGTTAAAGATGCAGGTTEST: gi|209726030|gb|BW654802.1|BW654802
genomic: GTTGAGGATTGCAATTTTGGTTTCCAAAGCAGCACTTCAATTTATCCAAAgtaagtttct ... tcacatccagGCGTGCAACTAAGCGATTACAAACTGCCAGAGGAAGTTAAAGATGCAGGTT
EST: GTTGAGGATTGCAATTTTGGTTTCCAAAGCAGCACTTCAATTTATCCAAA GCGTGCAACTAAGCGATTACAAACTGCCAGAGGAAGTTAAAGATGCAGGTT
genomic: GTTGAGGATTGCAATTTTGGTTTCCAAAGCAGCACTTCAATTTATCCAAAgtaagtttct ... tcacatccagGCGTGCAACTAAGCGATTACAAACTGCCAGAGGAAGTTAAAGATGCAGGTT
ttatttaaatagcttatatatatgagtcaatatgcttacttgtgatcacatccagGCGTGCAACTAAGCGATTACAAACTGCCAGAGGAAGTTAAAGATGCAGGTTTTCAAATCTGCGGCGATGAATTAGGGTCTATTGTTGAAGTCCATGATGT
tgcttac putative branch site (score: 2)
taaatagcttatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttcttcagaattatttaaatagcttatatatatgagtcaatatgcttacttgtgatcacatccagGCGTGCAACTAAGCGATTACAAACTGCCAGAGGAAGTTAAAGATGCAGGTTTTCAAATCTGCGGCGATGAATTAGGGTCTATTGTTGAAGTCCATGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG