Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9204256|gb|BE330480.1|BE330480EST: TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTG CGCTATGATGGAAAGAAAGCAGCA
genomic: TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTGgtaggtttaa ... ttacttttagCGCTATGATGGAAAGAGAGCAGCA
EST:
gi|9899526|gb|BE608494.1|BE608494EST: TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTG GGCTATGATGGAAAGAGAGCAGCATAAGGGCCCAAGCCCGAC
genomic: TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTGgtaggtttaa ... ttacttttagCGCTATGATGGAAAGAGAGCAGCAGAAGG-CACAAGCCCGAC
EST:
gi|20813178|gb|BQ297656.1|BQ297656EST: TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTG CGCTATGATGGAAAG
genomic: TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTGgtaggtttaa ... ttacttttagCGCTATGATGGAAAG
EST:
gi|6134085|gb|AW132414.1|AW132414EST: TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTG CGCTATGATGGAAAGAGAGCAGCAGAAGGCACA
genomic: TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTGgtaggtttaa ... ttacttttagCGCTATGATGGAAAGAGAGCAGCAGAAGGCACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caggattacatccttgttgctaatagtaagcttaaattttctgttttacttttagCGCTATGATGGAAAGAGAGCAGCAGAAGGCACAAGCCCGACCATGGACTGAAATTTTCAGCTTAATTGAACTTTATTTGCCACATTTTTTAAGTCACAAC
tgctaat putative branch site (score: 2)
ttttctgttttacttt putative PPT
ttaaattttctgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggtttaatatatttttttccattcacaatgttgtgacaaatgttggttattaattcattaatggtgtttttatcaggattacatccttgttgctaatagtaagcttaaattttctgttttacttttagCGCTATGATGGAAAGAGAGCAGCAGAAGGCACAAGCCCGACCATGGACTGAAATTTTCAGCTTAATTGAACTTTATTTGCCACATTTTTTAAGTCACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT