1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagatcatgattaattatgtaccaacattgagtaaaatgacaccggcttagtcaattatttttttatgaaaccattaattatcacattcagacacacatatataaatatatgatgatgatgatgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTTAAGCTTATCAATGCCAAGAACACCATGGAAATAGGCGTCTTCACTGGT
species | Glycine max |
transcript | GLYMA01G39460.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|213590575|gb|DB973320.1|DB973320
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|7587911|gb|AW703717.1|AW703717
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|37995278|gb|CF806867.1|CF806867
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|254344201|gb|GR855286.1|GR855286
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|192319030|gb|FK006870.1|FK006870
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|192302884|gb|FG998566.1|FG998566
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|192329604|gb|FK022240.1|FK022240
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|254341478|gb|GR850691.1|GR850691
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|192319031|gb|FK006871.1|FK006871
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|254336450|gb|GR842629.1|GR842629
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|192312912|gb|FK004054.1|FK004054
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|254334127|gb|GR849045.1|GR849045
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|7591460|gb|AW707192.1|AW707192
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|192312913|gb|FK004055.1|FK004055
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|298174983|gb|HO017978.1|HO017978
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|254317284|gb|GR826229.1|GR826229
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|192299316|gb|FG990741.1|FG990741
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|209697719|gb|BW655620.1|BW655620
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|192294842|gb|FG987531.1|FG987531
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAACTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|37996206|gb|CF807795.1|CF807795
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|13252345|gb|BG363248.1|BG363248
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|254317493|gb|GR826477.1|GR826477
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTEST: gi|192298656|gb|FG988567.1|FG988567
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
attatcacattcagacacacatatataaatatatgatgatgatgatgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTTAAGCTTATCAATGCCAAGAACACCATGGAAATAGGCGTCTTCACTGGT
cattaat putative branch site (score: 3)
atatataaatatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatcatgattaattatgtaccaacattgagtaaaatgacaccggcttagtcaattatttttttatgaaaccattaattatcacattcagacacacatatataaatatatgatgatgatgatgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCTTAAGCTTATCAATGCCAAGAACACCATGGAAATAGGCGTCTTCACTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA