1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attgagattgaactcttgaataagagggttttgacttttggtgcatctcacaatgcgtgcattttggttaaaaagctttgcgtgatgactggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAAGTTTCTCCGCGGCGACAGGTGCCGAAGAATATACCGAGGCCTCCGTAT
species | Glycine max |
transcript | GLYMA01G39200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAG AAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAEST: gi|209704050|gb|BW673650.1|BW673650
genomic: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGgtatctgcgc ... ggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
EST: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAG AAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAEST: gi|209710614|gb|BW676540.1|BW676540
genomic: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGgtatctgcgc ... ggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
EST: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAG AAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAEST: gi|5509561|gb|AI856119.1|AI856119
genomic: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGgtatctgcgc ... ggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
EST: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAG AAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAEST: gi|12691283|gb|BG157619.1|BG157619
genomic: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGgtatctgcgc ... ggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
EST: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAG AAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAEST: gi|13125644|gb|BG316214.1|BG316214
genomic: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGgtatctgcgc ... ggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
EST: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAG AAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAEST: gi|151401050|gb|EV270864.1|EV270864
genomic: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGgtatctgcgc ... ggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
EST: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAG AAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAEST: gi|192305235|gb|FG993973.1|FG993973
genomic: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGgtatctgcgc ... ggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
EST: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAG AAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAEST: gi|17023236|gb|BM094270.1|BM094270
genomic: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGgtatctgcgc ... ggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
EST: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAG AAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAEST: gi|213589240|gb|DB957772.1|DB957772
genomic: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGgtatctgcgc ... ggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
EST: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAG AAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAEST: gi|298197093|gb|HO041836.1|HO041836
genomic: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGgtatctgcgc ... ggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
EST: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAG AAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAEST: gi|151410050|gb|EV279858.1|EV279858
genomic: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGgtatctgcgc ... ggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
EST: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAG AAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAEST: gi|192300116|gb|FG991892.1|FG991892
genomic: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGgtatctgcgc ... ggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
EST: CAGTTATCTAGAACACTTTCT-GCTTGACCAATCTCTTTTTTAATAGAAG AAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAEST: gi|298189864|gb|HO038267.1|HO038267
genomic: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGgtatctgcgc ... ggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
EST: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAG AAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
genomic: CAGTTATCTAGAACACTTTCTGGCTTGACCAATCTCTTTTTTAATAGAAGgtatctgcgc ... ggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAA
tctcacaatgcgtgcattttggttaaaaagctttgcgtgatgactggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAAGTTTCTCCGCGGCGACAGGTGCCGAAGAATATACCGAGGCCTCCGTAT
atctcac putative branch site (score: 3)
attttggttaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgagattgaactcttgaataagagggttttgacttttggtgcatctcacaatgcgtgcattttggttaaaaagctttgcgtgatgactggctttgcagAAATTTGGATGAATTGCCTAACAGCAAGCGTAAACGTCTGAGACCTGGGAAAGTTTCTCCGCGGCGACAGGTGCCGAAGAATATACCGAGGCCTCCGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - ggttttg
- - - - - - - - - - - - - - - - - - - tggtgca
- - - - - - - - - - - - - - - - - - - - - - - - -acaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgac