1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgtgcatgatgttcatattccttttgtgattgaactccccaagtgtttattctacaacccctctggcagtgtaattatgtgttcaaactgtgcagGTTGATAAGTTGAAGAGGAAGCTCAGACATGAAGAGAATGTTCACAGAGCGTTAGAAAGAGCATTGACAAGACCTTTGGGATCCCTTCCTCGTCTTCCTC
species | Glycine max |
transcript | GLYMA01G39120.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAATGGGCGTCGATCCAATAGAGAAAGGAAAATAGCCTTGACACAAGAT GTTGATAAGTTGAAGAGGAAGCTCAGACATTGAAGEST: gi|193724480|gb|FK662668.1|FK662668
genomic: AAAATGGGCGTCGATCCAATAGAGAAAGGAAAATAGCCTTGACACAAGATgtatgtgcat ... aactgtgcagGTTGATAAGTTGAAGAGGAAGCTCAGACAT-GAAG
EST: AAAATGGGCGTCGATCCAATAGAGAAAGGAAAATAGCCTTGACACAAGAT GTTGATAAGTTGAAGAGGAAGCTCAGACATGAAGAGAATGTTCA
genomic: AAAATGGGCGTCGATCCAATAGAGAAAGGAAAATAGCCTTGACACAAGATgtatgtgcat ... aactgtgcagGTTGATAAGTTGAAGAGGAAGCTCAGACATGAAGAGAATGTTCA
aagtgtttattctacaacccctctggcagtgtaattatgtgttcaaactgtgcagGTTGATAAGTTGAAGAGGAAGCTCAGACATGAAGAGAATGTTCACAGAGCGTTAGAAAGAGCATTGACAAGACCTTTGGGATCCCTTCCTCGTCTTCCTC
tttattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgcatgatgttcatattccttttgtgattgaactccccaagtgtttattctacaacccctctggcagtgtaattatgtgttcaaactgtgcagGTTGATAAGTTGAAGAGGAAGCTCAGACATGAAGAGAATGTTCACAGAGCGTTAGAAAGAGCATTGACAAGACCTTTGGGATCCCTTCCTCGTCTTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA