Sequence
atgc intronic sequence ATGC exonic sequencegttttacccttttggctttcattcacccttaccctttgtgatactattgacaaagtttctatttggggatttggggtttatgaaagttttgttttgtttttttgtttttttctgaagGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTAGCAGAGGAAAGTGCGAGATCTCAGCCTCAGACTGTTGCAAAGGCTAGTTCAGAGTCA
Basic information
species | Glycine max |
transcript | GLYMA01G38290.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G38290.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G50700.1 (Arabidopsis thaliana), 3'ss of exon 2
gttttacccttttggctttcattcacccttaccctttgtgatactattgacaaagtttctatttggggatttggggtttatgaaagttttgttttgtttttttgtttttttctgaagGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTAGCAGAGGAAAGTGCGAGATCTCAGCCTCAGACTGTTGCAAAGGCTAGTTCAGAGTCA
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----------------------------gtaaagtgtttgccttttttgatca--tacataagaaaaaattcaaaattca-acaatctaagttttgag---tgatttttgtttgcagGAGGGATAGTTTTATAACGCATAGAGCTTTTTGTGATGCTTTGGCTGAAGAAAATGCGAGAAGTCATCATAGTCAGAGTAAGAAACAGAATCCTGAAATT
upper sequence: GLYMA01G38290.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0001g12220.t01 (Vitis vinifera), 3'ss of exon 2
gttttacccttttggct-ttcattcacccttaccctttgtgatactattgacaaagtttctatttggggatttggggtttatgaaagttttgttttgtttttttgtttttttctgaagGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTAGCAGAGGAAAGTGCGAGATCTCAGCCTCAGACTGTTGCAAAGGCTAGTTCAGAGTCA
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------------tgattattctttttctcaaaaaccaaacgcggcaatttaagtagatggtgttttccatttatgggctgatg----ttgggtttcggtgtt--gttgaaacttgaagGAGGGATAGCTTCATCACACACAGGGCTTTCTGTGATGCTCTAGCTCAGGAGAGTGCTAGAGCGCAGGTCCTTCCCAGTACCAACACTGAGGAAAATCCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13251965|gb|BG362868.1|BG362868EST: ATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAG GAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTAGCAGAGGA
genomic: ATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGgttttaccct ... ttttctgaagGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTAGCAGAGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggggatttggggtttatgaaagttttgttttgtttttttgtttttttctgaagGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTAGCAGAGGAAAGTGCGAGATCTCAGCCTCAGACTGTTGCAAAGGCTAGTTCAGAGTCA
ttttgttttgtttttt CT-rich tract
tttatgaaagttttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttacccttttggctttcattcacccttaccctttgtgatactattgacaaagtttctatttggggatttggggtttatgaaagttttgttttgtttttttgtttttttctgaagGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTAGCAGAGGAAAGTGCGAGATCTCAGCCTCAGACTGTTGCAAAGGCTAGTTCAGAGTCA
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