1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaattttcacttttcaccactcaatcacattataatagctatcattatgtgcgtagtgtgaaattatttgcttcttattattgttagGTATACTCTAAATATATGGGATGTTGGGGGGCAGAAAACAATAAGATCTTACTGGAGAAACTACTTTGAGCAAACAGATGGTTTGGTTTGGGTGGTTGAC
species | Glycine max |
transcript | GLYMA01G38270.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCATCAGTCCCACGCTCGGCTTCAACATCAAAACCATAACTTACCAAAA GTATACTCTAAATATATGGGATGTTGGGGGGCAGAAAACAATAAGATCTTAEST: gi|51336376|gb|CO980242.1|CO980242
genomic: GTCATCAGTCCCACGCTCGGCTTCAACATCAAAACCATAACTTACCAAAAgtaattttca ... ttattgttagGTATACTCTAAATATATGGGATGTTGGGGGGCAGAAAACAATAAGATCTTA
EST: GTCATCAGTCCCACGCTCGGCTTCAACATCAAAACCATAACTTACCAAAA GTATACTCTAAATATATGGGATGTTGGGGGGCAGAAAACAATAAGATCTTAEST: gi|151404450|gb|EV274264.1|EV274264
genomic: GTCATCAGTCCCACGCTCGGCTTCAACATCAAAACCATAACTTACCAAAAgtaattttca ... ttattgttagGTATACTCTAAATATATGGGATGTTGGGGGGCAGAAAACAATAAGATCTTA
EST: GTCATCAGTCCCACGCTCGGCTTCAACATCAAAACCATAACTTACCAAAA GTATACTCTAAATATATGGGATGTTGGGGGGCAGAAAACAATGAGATCTTA
genomic: GTCATCAGTCCCACGCTCGGCTTCAACATCAAAACCATAACTTACCAAAAgtaattttca ... ttattgttagGTATACTCTAAATATATGGGATGTTGGGGGGCAGAAAACAATAAGATCTTA
taatagctatcattatgtgcgtagtgtgaaattatttgcttcttattattgttagGTATACTCTAAATATATGGGATGTTGGGGGGCAGAAAACAATAAGATCTTACTGGAGAAACTACTTTGAGCAAACAGATGGTTTGGTTTGGGTGGTTGAC
cttcttatt CT-rich tract
aaattatttgcttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttcacttttcaccactcaatcacattataatagctatcattatgtgcgtagtgtgaaattatttgcttcttattattgttagGTATACTCTAAATATATGGGATGTTGGGGGGCAGAAAACAATAAGATCTTACTGGAGAAACTACTTTGAGCAAACAGATGGTTTGGTTTGGGTGGTTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG