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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgtaaatgcatccgttaggttttcgctattttcgttgattatactttgtgtttcaattaatttatttgtttttctttctcttttcaagGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT

Basic information

species Glycine max
transcript GLYMA01G38120.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38120.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G50670.1 (Arabidopsis thaliana), 3'ss of exon 2
gttttgtaaatgcatccgttaggttttcgctattttcgttgattatactttgtgtttcaattaatttatttgtttttctttctcttttcaagGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT
                      || |   ||  | |   |||||||  ||| | |       | || ||||  | || | | |    |  ||| |||||||| ||||| || || |||||  ||||||| ||||||||||| |||||||||   ||||||   ||    |||
----------------------gtatcaacttgtatatctgattatgttttctttgctttggatttgattttgtcttgtgtattgaatatagGTATGGCTCAGTTTGTAAGTAACTTTGCTGAGCCTGGGGATCCAGAATACGCTCCACCTAAGCCAGAAGTTGAATTACCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590261|gb|DB963838.1|DB963838
EST:     GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAG                         GGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
genomic: GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAGgttttgtaaa ... tcttttcaagGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
EST: gi|209698701|gb|BW660702.1|BW660702
EST:     GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAG                         GGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
genomic: GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAGgttttgtaaa ... tcttttcaagGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
EST: gi|213613578|gb|DB963280.1|DB963280
EST:     GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAG                         GGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
genomic: GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAGgttttgtaaa ... tcttttcaagGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
EST: gi|209720113|gb|BW651142.1|BW651142
EST:     GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAG                         GGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
genomic: GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAGgttttgtaaa ... tcttttcaagGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
EST: gi|209698954|gb|BW652824.1|BW652824
EST:     GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAG                         GGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
genomic: GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAGgttttgtaaa ... tcttttcaagGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
EST: gi|209708951|gb|BW653492.1|BW653492
EST:     GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAG                         GGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
genomic: GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAGgttttgtaaa ... tcttttcaagGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
EST: gi|213589944|gb|DB969681.1|DB969681
EST:     GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAG                         GGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
genomic: GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAGgttttgtaaa ... tcttttcaagGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
EST: gi|209710662|gb|BW665074.1|BW665074
EST:     GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAG                         GGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
genomic: GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAGgttttgtaaa ... tcttttcaagGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
EST: gi|213601327|gb|DB956661.1|DB956661
EST:     GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAG                         GGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
genomic: GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAGgttttgtaaa ... tcttttcaagGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
EST: gi|208216880|gb|GE015206.1|GE015206
EST:     TGGTAGTTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAG                         GGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
genomic: TGG-AG-TACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAGgttttgtaaa ... tcttttcaagGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
EST: gi|298164362|gb|HO014007.1|HO014007
EST:     GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAG                         GGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG
genomic: GTTGGAGTACAAGCCGCCTCCGGAGAAACGGAAATGTCCACCGTTATCAGgttttgtaaa ... tcttttcaagGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgattatactttgtgtttcaattaatttatttgtttttctttctcttttcaagGGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT
                     aattaat  putative branch site (score: 3)
                       ttaatttatttgtttt  CT-rich tract
     ttatactttgtgtttc  TA-rich tract