1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgaagaagaaggagttcctcttcagtttcaacaaaacatcttttcactgaggtagcaatatttgacggaaaactatcaaatgcttttgtgcacatgcagGGCCAGGAGCTCCAGCTGTTTTCAACTGT
species | Glycine max |
transcript | GLYMA01G37790.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGATTTAGAGATTG GGCCAGGAGTTCCAGCTGTTTTCAACTGTEST: gi|192330469|gb|FK021214.1|FK021214
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGATTTAGAGATTGgtaaaacacc ... gcacatgcagGGCCAGGAGCTCCAGCTGTTTTCAACTGT
EST: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGATTTAGAGATTG GGCCAGGAGCTCCAGCTGTTTTCAACTGTEST: gi|192330470|gb|FK021215.1|FK021215
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGATTTAGAGATTGgtaaaacacc ... gcacatgcagGGCCAGGAGCTCCAGCTGTTTTCAACTGT
EST: CACGA-TTAGAGA-TG GGCCAGGAGCTCCAGCTGTTTTCAACTGTEST: gi|151412430|gb|EV282242.1|EV282242
genomic: CACGATTTAGAGATTGgtaaaacacc ... gcacatgcagGGCCAGGAGCTCCAGCTGTTTTCAACTGT
EST: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGATTTAGAGATTG GGCCAGAAGCTCCAGCTGTTTTCAACTGT
genomic: TCTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGATTTAGAGATTGgtaaaacacc ... gcacatgcagGGCCAGGAGCTCCAGCTGTTTTCAACTGT
cactgaggtagcaatatttgacggaaaactatcaaatgcttttgtgcacatgcagGGCCAGGAGCTCCAGCTGTTTTCAACTGT
atttgac putative branch site (score: 4)
aatatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaagaagaaggagttcctcttcagtttcaacaaaacatcttttcactgaggtagcaatatttgacggaaaactatcaaatgcttttgtgcacatgcagGGCCAGGAGCTCCAGCTGTTTTCAACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- -aagaagaa
- - - - - - - - -cctcttc
- - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttttg